Julien Dorier
Julien Dorier
Verified email at unil.ch
Cited by
Cited by
Quantum compass model on the square lattice
J Dorier, F Becca, F Mila
Physical Review B 72 (2), 024448, 2005
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes
F Benedetti, J Dorier, Y Burnier, A Stasiak
Nucleic acids research 42 (5), 2848-2855, 2014
Theory of magnetization plateaux in the Shastry-Sutherland model
J Dorier, KP Schmidt, F Mila
Physical review letters 101 (25), 250402, 2008
Topological origins of chromosomal territories
J Dorier, A Stasiak
Nucleic acids research 37 (19), 6316-6322, 2009
Supersolid phase induced by correlated hopping in spin-1/2 frustrated quantum magnets
KP Schmidt, J Dorier, AM Läuchli, F Mila
Physical review letters 100 (9), 090401, 2008
Transcription-induced supercoiling as the driving force of chromatin loop extrusion during formation of TADs in interphase chromosomes
D Racko, F Benedetti, J Dorier, A Stasiak
Nucleic acids research 46 (4), 1648-1660, 2018
Solids and supersolids of three-body interacting polar molecules on an optical lattice
KP Schmidt, J Dorier, AM Läuchli
Physical review letters 101 (15), 150405, 2008
Single-particle versus pair condensation of hard-core bosons with correlated hopping
KP Schmidt, J Dorier, A Läuchli, F Mila
Physical Review B 74 (17), 174508, 2006
Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids
D Goundaroulis, N Gügümcü, S Lambropoulou, J Dorier, A Stasiak, ...
Polymers 9 (9), 444, 2017
Studies of global and local entanglements of individual protein chains using the concept of knotoids
D Goundaroulis, J Dorier, F Benedetti, A Stasiak
Scientific reports 7 (1), 6309, 2017
DNA supercoiling inhibits DNA knotting
Y Burnier, J Dorier, A Stasiak
Nucleic acids research 36 (15), 4956-4963, 2008
The role of transcription factories-mediated interchromosomal contacts in the organization of nuclear architecture
J Dorier, A Stasiak
Nucleic acids research 38 (21), 7410-7421, 2010
Cooperative kinking at distant sites in mechanically stressed DNA
TA Lionberger, D Demurtas, G Witz, J Dorier, T Lillian, E Meyhöfer, ...
Nucleic acids research 39 (22), 9820-9832, 2011
KnotProt 2.0: a database of proteins with knots and other entangled structures
P Dabrowski-Tumanski, P Rubach, D Goundaroulis, J Dorier, P Sułkowski, ...
Nucleic acids research 47 (D1), D367-D375, 2019
Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe
F Benedetti, D Racko, J Dorier, Y Burnier, A Stasiak
Nucleic Acids Research 45 (17), 9850-9859, 2017
Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method
J Dorier, I Crespo, A Niknejad, R Liechti, M Ebeling, I Xenarios
BMC Bioinformatics 17 (1), 410, 2016
Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling
F Benedetti, A Japaridze, J Dorier, D Racko, R Kwapich, Y Burnier, ...
Nucleic acids research 43 (4), 2390-2399, 2015
Effects of supercoiling on enhancer–promoter contacts
F Benedetti, J Dorier, A Stasiak
Nucleic acids research 42 (16), 10425-10432, 2014
The SIB Swiss Institute of Bioinformatics" resources: focus on curated databases
LA Bultet, J Aguilar-Rodriguez, CH Ahrens, EL Ahrne, N Ai, L Aimo, ...
Nucleic Acids Research 44 (EPFL-ARTICLE-217833), D27-D37, 2016
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