Peter Koo
Peter Koo
Assistant Professor, Cold Spring Harbor Laboratory
כתובת אימייל מאומתת בדומיין cshl.edu - דף הבית
כותרת
צוטט על ידי
צוטט על ידי
שנה
The tethering of chromatin to the nuclear envelope supports nuclear mechanics
SM Schreiner, PK Koo, Y Zhao, SGJ Mochrie, MC King
Nature Communications 6 (1), 1-13, 2015
1382015
Single-molecule fluorescence spectroscopy using phospholipid bilayer nanodiscs
A Nath, AJ Trexler, P Koo, AD Miranker, WM Atkins, E Rhoades
Methods in Enzymology 472, 89-117, 2010
582010
Allosteric effects on substrate dissociation from cytochrome P450 3A4 in nanodiscs observed by ensemble and single-molecule fluorescence spectroscopy
A Nath, PK Koo, E Rhoades, WM Atkins
Journal of the American Chemical Society 130 (47), 15746-15747, 2008
392008
Representation learning of genomic sequence motifs with convolutional neural networks
PK Koo, SR Eddy
PLoS computational biology 15 (12), e1007560, 2019
372019
A demonstration of unsupervised machine learning in species delimitation
S Derkarabetian, S Castillo, PK Koo, S Ovchinnikov, M Hedin
Molecular Phylogenetics and Evolution 139, 106562, 2019
352019
Extracting diffusive states of Rho GTPase in live cells: towards in vivo biochemistry
PK Koo, M Weitzman, CR Sabanaygam, KL van Golen, SGJ Mochrie
PLoS Computational Biology 11 (10), e1004297, 2015
232015
Dynamics of cadmium sulfide nanoparticles within polystyrene melts
WS Jang, P Koo, K Bryson, S Narayanan, A Sandy, TP Russell, ...
Macromolecules 47 (18), 6483-6490, 2014
232014
Systems-level approach to uncovering diffusive states and their transitions from single-particle trajectories
PK Koo, SGJ Mochrie
Physical Review E 94 (5), 052412, 2016
222016
WASP family proteins regulate the mobility of the B cell receptor during signaling activation
I Rey-Suarez, BA Wheatley, P Koo, A Bhanja, Z Shu, S Mochrie, W Song, ...
Nature Communications 11, 2020
142020
The static and dynamic structure factor of a Diblock copolymer melt via small-angle x-ray scattering and x-ray photon correlation spectroscopy
WS Jang, P Koo, M Sykorsky, S Narayanan, A Sandy, SGJ Mochrie
Macromolecules 46 (21), 8628-8637, 2013
112013
Improving representations of genomic sequence motifs in convolutional networks with exponential activations
PK Koo, M Ploenzke
Nature Machine Intelligence, 2021
102021
High magnetic field effect on texture and grain growth of GNO silicon steel
CMB Bacaltchuk, GA Castello Branco, H Garmestani, C Iskandar, P Koo, ...
Materialwissenschaft und Werkstofftechnik: Entwicklung, Fertigung, Prüfung …, 2005
102005
Deep learning for inferring transcription factor binding sites
PK Koo, M Ploenzke
Current Opinion in Systems Biology 19, 16-23, 2020
92020
ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancer
TDD Somerville, Y Xu, XS Wu, D Maia-Silva, SK Hur, LMN de Almeida, ...
Proceedings of the National Academy of Sciences 117 (21), 11471-11482, 2020
92020
Inferring sequence-structure preferences of rna-binding proteins with convolutional residual networks
PK Koo, P Anand, SB Paul, SR Eddy
bioRxiv, 418459, 2018
92018
Improved Determination of Subnuclear Position Enabled by Three-Dimensional Membrane Reconstruction
Y Zhao, SM Schreiner, PK Koo, P Colombi, MC King, SGJ Mochrie
Biophysical Journal 111 (1), 19-24, 2016
92016
The architecture of the 12RSS in V (D) J recombination signal and synaptic complexes
M Ciubotaru, MD Surleac, LA Metskas, P Koo, E Rhoades, AJ Petrescu, ...
Nucleic Acids Research 43 (2), 917-931, 2015
92015
Unified framework for modeling multivariate distributions in biological sequences
J Dauparas, H Wang, A Swartz, P Koo, M Nitzan, S Ovchinnikov
arXiv preprint arXiv:1810.04805, 2019
72019
Improving Convolutional Network Interpretability with Exponential Activations
PK Koo, M Ploenzke
bioRxiv, 650804, 2019
52019
Global importance analysis: An interpretability method to quantify importance of genomic features in deep neural networks
PK Koo, A Majdandzic, M Ploenzke, P Anand, S Paul
PLoS Computational Biology 17 (5), e1008925, 2021
42021
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מאמרים 1–20