Qing Nie
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Differentialequations. jl–a performant and feature-rich ecosystem for solving differential equations in julia
C Rackauckas, Q Nie
Journal of open research software 5 (1), 2017
Do morphogen gradients arise by diffusion?
AD Lander, Q Nie, FYM Wan
Developmental cell 2 (6), 785-796, 2002
Inference and analysis of cell-cell communication using CellChat
S Jin, CF Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, ...
Nature communications 12 (1), 1-20, 2021
Nonlinear simulation of tumor growth
V Cristini, J Lowengrub, Q Nie
Journal of mathematical biology 46 (3), 191-224, 2003
Cell lineages and the logic of proliferative control
AD Lander, KK Gokoffski, FYM Wan, Q Nie, AL Calof
PLoS biology 7 (1), e1000015, 2009
Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo
RJ White, Q Nie, AD Lander, TF Schilling
PLoS biology 5 (11), e304, 2007
Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds
CF Guerrero-Juarez, PH Dedhia, S Jin, R Ruiz-Vega, D Ma, Y Liu, ...
Nature communications 10 (1), 1-17, 2019
An Ovol2-Zeb1 mutual inhibitory circuit governs bidirectional and multi-step transition between epithelial and mesenchymal states
T Hong, K Watanabe, CH Ta, A Villarreal-Ponce, Q Nie, X Dai
PLoS computational biology 11 (11), e1004569, 2015
Formation of the BMP activity gradient in the Drosophila embryo
CM Mizutani, Q Nie, FYM Wan, YT Zhang, P Vilmos, R Sousa-Neves, ...
Developmental cell 8 (6), 915-924, 2005
Free extracellular diffusion creates the Dpp morphogen gradient of the Drosophila wing disc
S Zhou, WC Lo, JL Suhalim, MA Digman, E Gratton, Q Nie, AD Lander
Current Biology 22 (8), 668-675, 2012
Efficient semi-implicit schemes for stiff systems
Q Nie, YT Zhang, R Zhao
Journal of Computational Physics 214 (2), 521-537, 2006
Robust spatial sensing of mating pheromone gradients by yeast cells
TI Moore, CS Chou, Q Nie, NL Jeon, TM Yi
PloS one 3 (12), e3865, 2008
Feedback regulation in multistage cell lineages
WC Lo, CS Chou, KK Gokoffski, FYM Wan, AD Lander, AL Calof, Q Nie
Mathematical biosciences and engineering: MBE 6 (1), 59, 2009
Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells
B Lee, A Villarreal-Ponce, M Fallahi, J Ovadia, P Sun, QC Yu, S Ito, ...
Developmental cell 29 (1), 47-58, 2014
A theoretical framework for specificity in cell signaling
NL Komarova, X Zou, Q Nie, L Bardwell
Molecular Systems Biology 1 (1), 2005.0023, 2005
Nonsingular surface quasi-geostrophic flow
P Constantin, Q Nie, N Schörghofer
Physics Letters A 241 (3), 168-172, 1998
Dynamics and precision in retinoic acid morphogen gradients
TF Schilling, Q Nie, AD Lander
Current opinion in genetics & development 22 (6), 562-569, 2012
Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain
L Zhang, K Radtke, L Zheng, AQ Cai, TF Schilling, Q Nie
Molecular systems biology 8 (1), 613, 2012
Compact integration factor methods in high spatial dimensions
Q Nie, FYM Wan, YT Zhang, XF Liu
Journal of Computational Physics 227 (10), 5238-5255, 2008
Inferring spatial and signaling relationships between cells from single cell transcriptomic data
Z Cang, Q Nie
Nature communications 11 (1), 1-13, 2020
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Articles 1–20