| Differentialequations. jl–a performant and feature-rich ecosystem for solving differential equations in julia C Rackauckas, Q Nie Journal of open research software 5 (1), 2017 | 693 | 2017 |
| Do morphogen gradients arise by diffusion? AD Lander, Q Nie, FYM Wan Developmental cell 2 (6), 785-796, 2002 | 484 | 2002 |
| Inference and analysis of cell-cell communication using CellChat S Jin, CF Guerrero-Juarez, L Zhang, I Chang, R Ramos, CH Kuan, ... Nature communications 12 (1), 1-20, 2021 | 352 | 2021 |
| Nonlinear simulation of tumor growth V Cristini, J Lowengrub, Q Nie Journal of mathematical biology 46 (3), 191-224, 2003 | 344 | 2003 |
| Cell lineages and the logic of proliferative control AD Lander, KK Gokoffski, FYM Wan, Q Nie, AL Calof PLoS biology 7 (1), e1000015, 2009 | 309 | 2009 |
| Complex Regulation of cyp26a1 Creates a Robust Retinoic Acid Gradient in the Zebrafish Embryo RJ White, Q Nie, AD Lander, TF Schilling PLoS biology 5 (11), e304, 2007 | 243 | 2007 |
| Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds CF Guerrero-Juarez, PH Dedhia, S Jin, R Ruiz-Vega, D Ma, Y Liu, ... Nature communications 10 (1), 1-17, 2019 | 220 | 2019 |
| An Ovol2-Zeb1 mutual inhibitory circuit governs bidirectional and multi-step transition between epithelial and mesenchymal states T Hong, K Watanabe, CH Ta, A Villarreal-Ponce, Q Nie, X Dai PLoS computational biology 11 (11), e1004569, 2015 | 220 | 2015 |
| Formation of the BMP activity gradient in the Drosophila embryo CM Mizutani, Q Nie, FYM Wan, YT Zhang, P Vilmos, R Sousa-Neves, ... Developmental cell 8 (6), 915-924, 2005 | 178 | 2005 |
| Free extracellular diffusion creates the Dpp morphogen gradient of the Drosophila wing disc S Zhou, WC Lo, JL Suhalim, MA Digman, E Gratton, Q Nie, AD Lander Current Biology 22 (8), 668-675, 2012 | 141 | 2012 |
| Efficient semi-implicit schemes for stiff systems Q Nie, YT Zhang, R Zhao Journal of Computational Physics 214 (2), 521-537, 2006 | 136 | 2006 |
| Robust spatial sensing of mating pheromone gradients by yeast cells TI Moore, CS Chou, Q Nie, NL Jeon, TM Yi PloS one 3 (12), e3865, 2008 | 129 | 2008 |
| Feedback regulation in multistage cell lineages WC Lo, CS Chou, KK Gokoffski, FYM Wan, AD Lander, AL Calof, Q Nie Mathematical biosciences and engineering: MBE 6 (1), 59, 2009 | 118 | 2009 |
| Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells B Lee, A Villarreal-Ponce, M Fallahi, J Ovadia, P Sun, QC Yu, S Ito, ... Developmental cell 29 (1), 47-58, 2014 | 107 | 2014 |
| A theoretical framework for specificity in cell signaling NL Komarova, X Zou, Q Nie, L Bardwell Molecular Systems Biology 1 (1), 2005.0023, 2005 | 100 | 2005 |
| Nonsingular surface quasi-geostrophic flow P Constantin, Q Nie, N Schörghofer Physics Letters A 241 (3), 168-172, 1998 | 97 | 1998 |
| Dynamics and precision in retinoic acid morphogen gradients TF Schilling, Q Nie, AD Lander Current opinion in genetics & development 22 (6), 562-569, 2012 | 94 | 2012 |
| Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain L Zhang, K Radtke, L Zheng, AQ Cai, TF Schilling, Q Nie Molecular systems biology 8 (1), 613, 2012 | 89 | 2012 |
| Compact integration factor methods in high spatial dimensions Q Nie, FYM Wan, YT Zhang, XF Liu Journal of Computational Physics 227 (10), 5238-5255, 2008 | 89 | 2008 |
| Inferring spatial and signaling relationships between cells from single cell transcriptomic data Z Cang, Q Nie Nature communications 11 (1), 1-13, 2020 | 83 | 2020 |
