| New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 S Guindon, JF Dufayard, V Lefort, M Anisimova, W Hordijk, O Gascuel Systematic biology 59 (3), 307-321, 2010 | 18561 | 2010 |
| Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative M Anisimova, O Gascuel Systematic biology 55 (4), 539-552, 2006 | 3063 | 2006 |
| Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011 | 1149 | 2011 |
| Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution M Anisimova, JP Bielawski, Z Yang Molecular biology and evolution 18 (8), 1585-1592, 2001 | 751 | 2001 |
| Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites M Anisimova, R Nielsen, Z Yang Genetics 164 (3), 1229-1236, 2003 | 607 | 2003 |
| Accuracy and power of Bayes prediction of amino acid sites under positive selection M Anisimova, JP Bielawski, Z Yang Molecular biology and evolution 19 (6), 950-958, 2002 | 427 | 2002 |
| Morphometric, behavioral, and genomic evidence for a new orangutan species A Nater, MP Mattle-Greminger, A Nurcahyo, MG Nowak, M De Manuel, ... Current Biology 27 (22), 3487-3498. e10, 2017 | 356 | 2017 |
| Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ... Nucleic acids research 47 (21), 10994-11006, 2019 | 302 | 2019 |
| Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex N Peeters, S Carrère, M Anisimova, L Plener, AC Cazalé, S Genin BMC genomics 14, 1-19, 2013 | 257 | 2013 |
| Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites M Anisimova, Z Yang Molecular biology and evolution 24 (5), 1219-1228, 2007 | 212 | 2007 |
| Investigating protein-coding sequence evolution with probabilistic codon substitution models M Anisimova, C Kosiol Molecular biology and evolution 26 (2), 255-271, 2009 | 182 | 2009 |
| ALF—A Simulation Framework for Genome Evolution DA Dalquen, M Anisimova, GH Gonnet, C Dessimoz Molecular Biology and Evolution, 2011 | 180 | 2011 |
| Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts P Remigi, M Anisimova, A Guidot, S Genin, N Peeters New Phytologist 192 (4), 976-987, 2011 | 125 | 2011 |
| CodonPhyML: Fast Maximum Likelihood Phylogeny Estimation under Codon Substitution Models M Gil, S Zanetti, Marcelo Serrano, Zoller, M Anisimova Mol Biol Evol, doi:10.1093/molbev/mst029, 2013 | 117 | 2013 |
| The quest for natural selection in the age of comparative genomics M Anisimova, DA Liberles Heredity 99 (6), 567-579, 2007 | 85 | 2007 |
| Querying knowledge graphs in natural language S Liang, K Stockinger, TM De Farias, M Anisimova, M Gil Journal of big Data 8 (1), 3, 2021 | 79 | 2021 |
| State-of the art methodologies dictate new standards for phylogenetic analysis M Anisimova, DA Liberles, H Philippe, J Provan, T Pupko, A Von Haeseler BMC evolutionary biology 13, 1-8, 2013 | 72 | 2013 |
| Phylogenomic analysis of natural selection pressure in Streptococcus genomes M Anisimova, J Bielawski, K Dunn, Z Yang BMC evolutionary biology 7, 1-13, 2007 | 69 | 2007 |
| The evolution and function of protein tandem repeats in plants E Schaper, M Anisimova New Phytologist 206 (1), 397-410, 2015 | 68 | 2015 |
| Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences E Schaper, AV Kajava, A Hauser, M Anisimova Nucl. Acids Res. 40 (20), 10005-10017, 2012 | 68 | 2012 |
Manuel GilCo-director Centre of Bioinformatics, ZHAWVerified email at zhaw.ch
