| Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation J Russell, M Mascher, IK Dawson, S Kyriakidis, C Calixto, F Freund, ... Nature Genetics 48 (9), 1024-1030, 2016 | 251 | 2016 |
| A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing R Zhang, CPG Calixto, Y Marquez, P Venhuizen, NA Tzioutziou, W Guo, ... Nucleic acids research 45 (9), 5061-5073, 2017 | 237 | 2017 |
| Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome CPG Calixto, W Guo, AB James, NA Tzioutziou, JC Entizne, PE Panter, ... The Plant Cell 30 (7), 1424-1444, 2018 | 234 | 2018 |
| 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists W Guo, NA Tzioutziou, G Stephen, I Milne, CPG Calixto, R Waugh, ... RNA biology 18 (11), 1574-1587, 2021 | 86 | 2021 |
| Evolutionary Relationships Among Barley and Arabidopsis Core Circadian Clock and Clock-Associated Genes CPG Calixto, R Waugh, JWS Brown Journal of Molecular Evolution 80, 108-119, 2015 | 61 | 2015 |
| Cold-dependent expression and alternative splicing of Arabidopsis long non-coding RNAs CPG Calixto, NA Tzioutziou, AB James, C Hornyik, W Guo, R Zhang, ... Frontiers in Plant Science 10, 404796, 2019 | 57 | 2019 |
| Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli SH Kim, M Spensley, SK Choi, CPG Calixto, AF Pendle, O Koroleva, ... Nucleic acids research 38 (9), 3054-3067, 2010 | 49 | 2010 |
| AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript‐specific expression in Arabidopsis thaliana R Zhang, CPG Calixto, NA Tzioutziou, AB James, CG Simpson, W Guo, ... New Phytologist 208 (1), 96-101, 2015 | 44 | 2015 |
| A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis R Zhang, R Kuo, M Coulter, CPG Calixto, JC Entizne, W Guo, Y Marquez, ... Genome biology 23 (1), 149, 2022 | 36 | 2022 |
| High‐quality reference transcript datasets hold the key to transcript‐specific RNA‐sequencing analysis in plants JWS Brown, CPG Calixto, R Zhang New Phytologist 213 (2), 525-530, 2017 | 35 | 2017 |
| TSIS: an R package to infer alternative splicing isoform switches for time-series data W Guo, CPG Calixto, JWS Brown, R Zhang Bioinformatics 33 (20), 3308-3310, 2017 | 30 | 2017 |
| Alternative splicing of barley clock genes in response to low temperature CPG Calixto, CG Simpson, R Waugh, JWS Brown PLoS One 11 (12), e0168028, 2016 | 27 | 2016 |
| How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY) AB James, CPG Calixto, NA Tzioutziou, W Guo, R Zhang, CG Simpson, ... Plant, cell & environment 41 (7), 1539-1550, 2018 | 25 | 2018 |
| Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size W Guo, CPG Calixto, N Tzioutziou, P Lin, R Waugh, JWS Brown, R Zhang BMC systems biology 11, 1-12, 2017 | 22 | 2017 |
| Alternative splicing of circadian clock genes correlates with temperature in field-grown sugarcane LLB Dantas, CPG Calixto, MM Dourado, MS Carneiro, JWS Brown, ... Frontiers in Plant Science 10, 1614, 2019 | 20 | 2019 |
| Reading between the lines: RNA-seq data mining reveals the alternative message of the rice leaf transcriptome in response to heat stress CB Vitoriano, CPG Calixto Plants 10 (8), 1647, 2021 | 13 | 2021 |
| AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data R Zhang, CPG Calixto, Y Marquez, P Venhuizen, NA Tzioutziou, W Guo, ... BioRxiv, 051938, 2016 | 13 | 2016 |
| Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes CG Simpson, J Fuller, CPG Calixto, J McNicol, C Booth, JWS Brown, ... Environmental Responses in Plants: Methods and Protocols, 119-132, 2016 | 10 | 2016 |
| TranSuite: a software suite for accurate translation and characterization of transcripts JC Entizne, W Guo, CPG Calixto, M Spensley, N Tzioutziou, R Zhang, ... BioRxiv, 2020.12. 15.422989, 2020 | 8 | 2020 |
| High-resolution RT-PCR analysis of alternative barley transcripts CG Simpson, J Fuller, P Rapazote-Flores, CD Mayer, CPG Calixto, ... Barley: Methods and Protocols, 269-281, 2019 | 5 | 2019 |
John W. S. BrownProfessor of Plant Molecular Biology, University of DundeeVerified email at dundee.ac.uk
