Noelle Noyes
Noelle Noyes
Assistant Professor, University of Minnesota
Verified email at
Cited by
Cited by
MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
Impact of sequencing depth on the characterization of the microbiome and resistome
R Zaheer, N Noyes, R Ortega Polo, SR Cook, E Marinier, ...
Scientific reports 8 (1), 5890, 2018
Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within the microbiome of the beef production chain
X Yang, NR Noyes, E Doster, JN Martin, LM Linke, RJ Magnuson, H Yang, ...
Applied and environmental microbiology 82 (8), 2433-2443, 2016
Succinct colored de Bruijn graphs
MD Muggli, A Bowe, NR Noyes, PS Morley, KE Belk, R Raymond, T Gagie, ...
Bioinformatics 33 (20), 3181-3187, 2017
Resistome diversity in cattle and the environment decreases during beef production
NR Noyes, X Yang, LM Linke, RJ Magnuson, A Dettenwanger, S Cook, ...
elife 5, e13195, 2016
Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems
NR Noyes, X Yang, LM Linke, RJ Magnuson, SR Cook, R Zaheer, H Yang, ...
Scientific reports 6 (1), 24645, 2016
Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
N Noyes, KC Cho, J Ravel, LJ Forney, Z Abdo
PloS one 13 (1), e0191625, 2018
Mannheimia haemolytica in Feedlot Cattle: Prevalence of Recovery and Associations with Antimicrobial Use, Resistance, and Health Outcomes
NR Noyes, KM Benedict, SP Gow, CW Booker, SJ Hannon, TA McAllister, ...
Journal of veterinary internal medicine 29 (2), 705-713, 2015
A comparative study of serum biochemistry, metabolome and microbiome parameters of clinically healthy, normal weight, overweight, and obese companion dogs
GM Forster, J Stockman, N Noyes, AL Heuberger, CD Broeckling, ...
Topics in companion animal medicine 33 (4), 126-135, 2018
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5, 1-13, 2017
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
Frontiers in microbiology 10, 1980, 2019
Antimicrobial Resistance in Escherichia coli Recovered from Feedlot Cattle and Associations with Antimicrobial Use
KM Benedict, SP Gow, TA McAllister, CW Booker, SJ Hannon, ...
PloS one 10 (12), e0143995, 2015
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
Considerations and best practices in animal science 16S ribosomal RNA gene sequencing microbiome studies
MD Weinroth, AD Belk, C Dean, N Noyes, DK Dittoe, MJ Rothrock Jr, ...
Journal of animal science 100 (2), skab346, 2022
MEGARes and AMR++, v3. 0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput …
N Bonin, E Doster, H Worley, LJ Pinnell, JE Bravo, P Ferm, S Marini, ...
Nucleic acids research 51 (D1), D744-D752, 2023
Mobilization of antibiotic resistance: are current approaches for colocalizing resistomes and mobilomes useful?
IB Slizovskiy, K Mukherjee, CJ Dean, C Boucher, NR Noyes
Frontiers in microbiology 11, 1376, 2020
Effects of ceftiofur and chlortetracycline on the resistomes of feedlot cattle
MD Weinroth, HM Scott, B Norby, GH Loneragan, NR Noyes, P Rovira, ...
Applied and environmental microbiology 84 (13), e00610-18, 2018
Whole-genome sequencing and concordance between antimicrobial susceptibility genotypes and phenotypes of bacterial isolates associated with bovine respiratory disease
JR Owen, N Noyes, AE Young, DJ Prince, PC Blanchard, TW Lehenbauer, ...
G3: Genes, Genomes, Genetics 7 (9), 3059-3071, 2017
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 294, 2019
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