Tomer Shlomi
Tomer Shlomi
Associate Professor of Computer Science, Technion
כתובת אימייל מאומתת בדומיין cs.technion.ac.il
כותרת
צוטט על ידי
צוטט על ידי
שנה
Associating genes and protein complexes with disease via network propagation
O Vanunu, O Magger, E Ruppin, T Shlomi, R Sharan
PLoS computational biology 6 (1), 2010
6692010
Network-based prediction of human tissue-specific metabolism
T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin
Nature biotechnology 26 (9), 1003, 2008
6052008
Quantitative flux analysis reveals folate-dependent NADPH production
J Fan, J Ye, JJ Kamphorst, T Shlomi, CB Thompson, JD Rabinowitz
Nature 510 (7504), 298-302, 2014
5602014
Regulatory on/off minimization of metabolic flux changes after genetic perturbations
T Shlomi, O Berkman, E Ruppin
Proceedings of the national academy of sciences 102 (21), 7695-7700, 2005
4752005
Predicting selective drug targets in cancer through metabolic networks
O Folger, L Jerby, C Frezza, E Gottlieb, E Ruppin, T Shlomi
Molecular systems biology 7 (1), 2011
4302011
Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase
C Frezza, L Zheng, O Folger, KN Rajagopalan, ED MacKenzie, L Jerby, ...
Nature 477 (7363), 225-228, 2011
3982011
A key role for mitochondrial gatekeeper pyruvate dehydrogenase in oncogene-induced senescence
J Kaplon, L Zheng, K Meissl, B Chaneton, VA Selivanov, G Mackay, ...
Nature 498 (7452), 109-112, 2013
3762013
Computational reconstruction of tissue‐specific metabolic models: application to human liver metabolism
L Jerby, T Shlomi, E Ruppin
Molecular systems biology 6 (1), 2010
3562010
A genome‐scale computational study of the interplay between transcriptional regulation and metabolism
T Shlomi, Y Eisenberg, R Sharan, E Ruppin
Molecular systems biology 3 (1), 2007
2562007
Glutamine‐driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia
J Fan, JJ Kamphorst, R Mathew, MK Chung, E White, T Shlomi, ...
Molecular systems biology 9 (1), 2013
2312013
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
K Yizhak, T Benyamini, W Liebermeister, E Ruppin, T Shlomi
Bioinformatics 26 (12), i255-i260, 2010
2212010
Reconstruction of Arabidopsis metabolic network models accounting for subcellular compartmentalization and tissue-specificity
S Mintz-Oron, S Meir, S Malitsky, E Ruppin, A Aharoni, T Shlomi
Proceedings of the National Academy of Sciences 109 (1), 339-344, 2012
2192012
Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect
T Shlomi, T Benyamini, E Gottlieb, R Sharan, E Ruppin
PLoS computational biology 7 (3), 2011
2052011
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways
N Tepper, T Shlomi
Bioinformatics 26 (4), 536-543, 2010
2032010
QPath: a method for querying pathways in a protein-protein interaction network
T Shlomi, D Segal, E Ruppin, R Sharan
BMC bioinformatics 7 (1), 199, 2006
1972006
iMAT: an integrative metabolic analysis tool
H Zur, E Ruppin, T Shlomi
Bioinformatics 26 (24), 3140-3142, 2010
1802010
Predicting metabolic biomarkers of human inborn errors of metabolism
T Shlomi, MN Cabili, E Ruppin
Molecular systems biology 5 (1), 2009
1662009
Metabolite concentrations, fluxes and free energies imply efficient enzyme usage
JO Park, SA Rubin, YF Xu, D Amador-Noguez, J Fan, T Shlomi, ...
Nature chemical biology 12 (7), 482, 2016
1592016
A direct comparison of protein interaction confidence assignment schemes
S Suthram, T Shlomi, E Ruppin, R Sharan, T Ideker
BMC bioinformatics 7 (1), 360, 2006
1382006
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments
O Ourfali, T Shlomi, T Ideker, E Ruppin, R Sharan
Bioinformatics 23 (13), i359-i366, 2007
1192007
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מאמרים 1–20