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yishai shimoni
yishai shimoni
Research Scientist, IBM Research Labs, Haifa, Israel
Verified email at il.ibm.com
Title
Cited by
Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
26722014
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
17322014
Regulation of gene expression by small non‐coding RNAs: a quantitative view
Y Shimoni, G Friedlander, G Hetzroni, G Niv, S Altuvia, O Biham, ...
Molecular systems biology 3 (1), 138, 2007
3892007
Elucidating compound mechanism of action by network perturbation analysis
JH Woo, Y Shimoni, WS Yang, P Subramaniam, A Iyer, P Nicoletti, ...
Cell 162 (2), 441-451, 2015
3522015
Improving breast cancer survival analysis through competition-based multidimensional modeling
E Bilal, J Dutkowski, J Guinney, IS Jang, BA Logsdon, G Pandey, ...
PLoS computational biology 9 (5), e1003047, 2013
1012013
Stochastic analysis of the SOS response in Escherichia coli
Y Shimoni, S Altuvia, H Margalit, O Biham
PloS one 4 (5), e5363, 2009
612009
Characterization of pure quantum states of multiple qubits using the Groverian entanglement measure
Y Shimoni, D Shapira, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 69 (6), 062303, 2004
602004
Benchmarking framework for performance-evaluation of causal inference analysis
Y Shimoni, C Yanover, E Karavani, Y Goldschmnidt
arXiv preprint arXiv:1802.05046, 2018
492018
Entangled quantum states generated by Shor’s factoring algorithm
Y Shimoni, D Shapira, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 72 (6), 062308, 2005
412005
Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells
J Hu, G Nudelman, Y Shimoni, M Kumar, Y Ding, C López, F Hayot, ...
PLoS One 6 (2), e16614, 2011
402011
An evaluation toolkit to guide model selection and cohort definition in causal inference
Y Shimoni, E Karavani, S Ravid, P Bak, TH Ng, SH Alford, D Meade, ...
arXiv preprint arXiv:1906.00442, 2019
362019
Groverian measure of entanglement for mixed states
D Shapira, Y Shimoni, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 73 (4), 044301, 2006
352006
Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification
Y Shimoni
PLoS computational biology 14 (2), e1006026, 2018
242018
Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation
Y Shimoni, G Nudelman, F Hayot, SC Sealfon
PloS one 6 (12), e29298, 2011
202011
Formation of multipartite entanglement using random quantum gates
Y Most, Y Shimoni, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 76 (2), 022328, 2007
202007
Analysis of Grover’s quantum search algorithm as a dynamical system
O Biham, D Shapira, Y Shimoni
Physical Review A 68 (2), 022326, 2003
192003
Entanglement of periodic states, the quantum fourier transform, and shor’s factoring algorithm
Y Most, Y Shimoni, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 81 (5), 052306, 2010
142010
Groverian entanglement measure of pure quantum states with arbitrary partitions
Y Shimoni, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 75 (2), 022308, 2007
142007
Algebraic analysis of quantum search with pure and mixed states
D Shapira, Y Shimoni, O Biham
Physical Review A—Atomic, Molecular, and Optical Physics 71 (4), 042320, 2005
142005
Plato's cave algorithm: inferring functional signaling networks from early gene expression shadows
Y Shimoni, MY Fink, S Choi, SC Sealfon
PLoS computational biology 6 (6), e1000828, 2010
132010
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