yishai shimoni
yishai shimoni
Research Scientist, IBM Research Labs, Haifa, Israel
Verified email at
Cited by
Cited by
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
Regulation of gene expression by small non‐coding RNAs: a quantitative view
Y Shimoni, G Friedlander, G Hetzroni, G Niv, S Altuvia, O Biham, ...
Molecular systems biology 3 (1), 138, 2007
Elucidating compound mechanism of action by network perturbation analysis
JH Woo, Y Shimoni, WS Yang, P Subramaniam, A Iyer, P Nicoletti, ...
Cell 162 (2), 441-451, 2015
Improving breast cancer survival analysis through competition-based multidimensional modeling
E Bilal, J Dutkowski, J Guinney, IS Jang, BA Logsdon, G Pandey, ...
PLoS computational biology 9 (5), e1003047, 2013
Stochastic analysis of the SOS response in Escherichia coli
Y Shimoni, S Altuvia, H Margalit, O Biham
PloS one 4 (5), e5363, 2009
Characterization of pure quantum states of multiple qubits using the Groverian entanglement measure
Y Shimoni, D Shapira, O Biham
Physical Review A 69 (6), 062303, 2004
Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells
J Hu, G Nudelman, Y Shimoni, M Kumar, Y Ding, C López, F Hayot, ...
PLoS One 6 (2), e16614, 2011
Benchmarking framework for performance-evaluation of causal inference analysis
Y Shimoni, C Yanover, E Karavani, Y Goldschmnidt
arXiv preprint arXiv:1802.05046, 2018
Entangled quantum states generated by Shor’s factoring algorithm
Y Shimoni, D Shapira, O Biham
Physical Review A 72 (6), 062308, 2005
Groverian measure of entanglement for mixed states
D Shapira, Y Shimoni, O Biham
Physical Review A 73 (4), 044301, 2006
An evaluation toolkit to guide model selection and cohort definition in causal inference
Y Shimoni, E Karavani, S Ravid, P Bak, TH Ng, SH Alford, D Meade, ...
arXiv preprint arXiv:1906.00442, 2019
Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification
Y Shimoni
PLoS computational biology 14 (2), e1006026, 2018
Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation
Y Shimoni, G Nudelman, F Hayot, SC Sealfon
PloS one 6 (12), e29298, 2011
Formation of multipartite entanglement using random quantum gates
Y Most, Y Shimoni, O Biham
Physical Review A 76 (2), 022328, 2007
Analysis of Grover’s quantum search algorithm as a dynamical system
O Biham, D Shapira, Y Shimoni
Physical Review A 68 (2), 022326, 2003
Plato's cave algorithm: inferring functional signaling networks from early gene expression shadows
Y Shimoni, MY Fink, S Choi, SC Sealfon
PLoS computational biology 6 (6), e1000828, 2010
Algebraic analysis of quantum search with pure and mixed states
D Shapira, Y Shimoni, O Biham
Physical Review A 71 (4), 042320, 2005
Entanglement of periodic states, the quantum fourier transform, and shor’s factoring algorithm
Y Most, Y Shimoni, O Biham
Physical Review A 81 (5), 052306, 2010
Groverian entanglement measure of pure quantum states with arbitrary partitions
Y Shimoni, O Biham
Physical Review A 75 (2), 022308, 2007
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