The Complete Genome Sequence of Escherichia coli K-12 FR Blattner, G Plunkett III, CA Bloch, NT Perna, V Burland, M Riley, ... science 277 (5331), 1453-1462, 1997 | 9942 | 1997 |
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies J van Helden, B André, J Collado-Vides Journal of molecular biology 281 (5), 827-842, 1998 | 1018 | 1998 |
EcoCyc: a comprehensive database resource for Escherichia coli IM Keseler, J Collado-Vides, S Gama-Castro, J Ingraham, S Paley, ... Nucleic acids research 33 (suppl_1), D334-D337, 2005 | 939 | 2005 |
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010 | 807 | 2010 |
EcoCyc: fusing model organism databases with systems biology IM Keseler, A Mackie, M Peralta-Gil, A Santos-Zavaleta, S Gama-Castro, ... Nucleic acids research 41 (D1), D605-D612, 2013 | 728 | 2013 |
Minimum information requested in the annotation of biochemical models (MIRIAM) NL Novère, A Finney, M Hucka, US Bhalla, F Campagne, J Collado-Vides, ... Nature biotechnology 23 (12), 1509-1515, 2005 | 712 | 2005 |
Control site location and transcriptional regulation in Escherichia coli J Collado-Vides, B Magasanik, JD Gralla Microbiological reviews 55 (3), 371-394, 1991 | 684 | 1991 |
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 669 | 2017 |
Identifying global regulators in transcriptional regulatory networks in bacteria A Martınez-Antonio, J Collado-Vides Current opinion in microbiology 6 (5), 482-489, 2003 | 651 | 2003 |
EcoCyc: a comprehensive database of Escherichia coli biology IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ... Nucleic acids research 39 (suppl_1), D583-D590, 2010 | 644 | 2010 |
From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli D Thieffry, AM Huerta, E Pérez‐Rueda, J Collado‐Vides Bioessays 20 (5), 433-440, 1998 | 639 | 1998 |
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 36 (suppl_1), D120-D124, 2008 | 627 | 2008 |
The ecocyc database PD Karp, M Riley, M Saier, IT Paulsen, J Collado-Vides, SM Paley, ... Nucleic acids research 30 (1), 56-58, 2002 | 594 | 2002 |
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond S Gama-Castro, H Salgado, A Santos-Zavaleta, D Ledezma-Tejeida, ... Nucleic acids research 44 (D1), D133-D143, 2016 | 550 | 2016 |
RegulonDB v8. 0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more H Salgado, M Peralta-Gil, S Gama-Castro, A Santos-Zavaleta, ... Nucleic acids research 41 (D1), D203-D213, 2013 | 517 | 2013 |
Operons in Escherichia coli: genomic analyses and predictions H Salgado, G Moreno-Hagelsieb, TF Smith, J Collado-Vides Proceedings of the National Academy of Sciences 97 (12), 6652-6657, 2000 | 491 | 2000 |
RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions H Salgado, S Gama-Castro, M Peralta-Gil, E Diaz-Peredo, ... Nucleic acids research 34 (suppl_1), D394-D397, 2006 | 483 | 2006 |
EcoCyc: A comprehensive view of Escherichia coli biology IM Keseler, C Bonavides-Martínez, J Collado-Vides, S Gama-Castro, ... Nucleic acids research 37 (suppl_1), D464-D470, 2009 | 469 | 2009 |
RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units) S Gama-Castro, H Salgado, M Peralta-Gil, A Santos-Zavaleta, ... Nucleic acids research 39 (suppl_1), D98-D105, 2010 | 467 | 2010 |
Discovering regulatory elements in non-coding sequences by analysis of spaced dyads J Helden, AF Rios, J Collado-Vides Nucleic acids research 28 (8), 1808-1818, 2000 | 449 | 2000 |