Recurrently deregulated lncRNAs in hepatocellular carcinoma Y Yang, L Chen, J Gu, H Zhang, J Yuan, Q Lian, G Lv, S Wang, Y Wu, ... Nature communications 8 (1), 14421, 2017 | 294 | 2017 |
VASC: dimension reduction and visualization of single-cell RNA-seq data by deep variational autoencoder D Wang, J Gu Genomics, Proteomics and Bioinformatics 16 (5), 320-331, 2018 | 215 | 2018 |
HCCDB: a database of hepatocellular carcinoma expression atlas Q Lian, S Wang, G Zhang, D Wang, G Luo, J Tang, L Chen, J Gu Genomics, Proteomics and Bioinformatics 16 (4), 269-275, 2018 | 215 | 2018 |
Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification D Wu, D Wang, MQ Zhang, J Gu BMC genomics 16, 1-10, 2015 | 163 | 2015 |
OncomiRDB: a database for the experimentally verified oncogenic and tumor-suppressive microRNAs D Wang, J Gu, T Wang, Z Ding Bioinformatics 30 (15), 2237-2238, 2014 | 148 | 2014 |
An entropy-based metric for assessing the purity of single cell populations B Liu, C Li, Z Li, D Wang, X Ren, Z Zhang Nature communications 11 (1), 3155, 2020 | 106 | 2020 |
Single-cell meta-analyses reveal responses of tumor-reactive CXCL13+ T cells to immune-checkpoint blockade B Liu, Y Zhang, D Wang, X Hu, Z Zhang Nature Cancer 3 (9), 1123-1136, 2022 | 86 | 2022 |
Trajectory and Functional Analysis of PD‐1high CD4+CD8+ T Cells in Hepatocellular Carcinoma by Single‐Cell Cytometry and Transcriptome Sequencing B Zheng, D Wang, X Qiu, G Luo, T Wu, S Yang, Z Li, Y Zhu, S Wang, R Wu, ... Advanced Science 7 (13), 2000224, 2020 | 74 | 2020 |
Integrative clustering methods of multi-omics data for molecule-based cancer classifications D Wang, J Gu Quantitative Biology 4, 58-67, 2016 | 59 | 2016 |
iMAP: integration of multiple single-cell datasets by adversarial paired transfer networks D Wang, S Hou, L Zhang, X Wang, B Liu, Z Zhang Genome biology 22, 1-24, 2021 | 37 | 2021 |
scCancer: a package for automated processing of single-cell RNA-seq data in cancer W Guo, D Wang, S Wang, Y Shan, C Liu, J Gu Briefings in bioinformatics 22 (3), bbaa127, 2021 | 36 | 2021 |
A pan-cancer single-cell panorama of human natural killer cells F Tang, J Li, L Qi, D Liu, Y Bo, S Qin, Y Miao, K Yu, W Hou, J Li, J Peng, ... Cell 186 (19), 4235-4251. e20, 2023 | 33 | 2023 |
Targeted sequencing reveals the mutational landscape responsible for sorafenib therapy in advanced hepatocellular carcinoma J Tang, CJ Sui, DF Wang, XY Lu, GJ Luo, Q Zhao, QY Lian, S Jeong, ... Theranostics 10 (12), 5384, 2020 | 18 | 2020 |
Accelerating the understanding of cancer biology through the lens of genomics D Wang, B Liu, Z Zhang Cell 186 (8), 1755-1771, 2023 | 14 | 2023 |
Integrative molecular analysis of metastatic hepatocellular carcinoma D Wang, Y Zhu, J Tang, Q Lian, G Luo, W Wen, MQ Zhang, H Wang, ... BMC Medical Genomics 12, 1-12, 2019 | 11 | 2019 |
Single-cell transcriptomic analysis reveals tumor cell heterogeneity and immune microenvironment features of pituitary neuroendocrine tumors N Yan, W Xie, D Wang, Q Fang, J Guo, Y Chen, X Li, L Gong, J Wang, ... Genome Medicine 16 (1), 2, 2024 | 2 | 2024 |
FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome J Zhou, S Ma, D Wang, J Zeng, T Jiang Nucleic acids research 46 (2), e11-e11, 2018 | 2 | 2018 |
Shaping immune landscape of colorectal cancer by cholesterol metabolites Y Bai, T Li, Q Wang, W You, H Yang, X Xu, Z Li, Y Zhang, C Yan, L Yang, ... EMBO Molecular Medicine, 1-27, 2024 | 1 | 2024 |