| Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas Cancer Genome Atlas Research Network New England Journal of Medicine 372 (26), 2481-2498, 2015 | 3043 | 2015 |
| Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ... Cell 164 (3), 550-563, 2016 | 2104 | 2016 |
| Predicting cancer outcomes from histology and genomics using convolutional networks P Mobadersany, S Yousefi, M Amgad, DA Gutman, JS Barnholtz-Sloan, ... Proceedings of the National Academy of Sciences 115 (13), E2970-E2979, 2018 | 997 | 2018 |
| Comprehensive and integrated genomic characterization of adult soft tissue sarcomas AJ Lazar, MD McLellan, MH Bailey, CA Miller, EL Appelbaum, MG Cordes, ... Cell 171 (4), 950-965, 2017 | 893 | 2017 |
| Monai: An open-source framework for deep learning in healthcare MJ Cardoso, W Li, R Brown, N Ma, E Kerfoot, Y Wang, B Murrey, ... arXiv preprint arXiv:2211.02701, 2022 | 481 | 2022 |
| MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set DA Gutman, LAD Cooper, SN Hwang, CA Holder, JJ Gao, TD Aurora, ... Radiology 267 (2), 560-569, 2013 | 467 | 2013 |
| T2–FLAIR mismatch, an imaging biomarker for IDH and 1p/19q status in lower-grade gliomas: a TCGA/TCIA project SH Patel, LM Poisson, DJ Brat, Y Zhou, L Cooper, M Snuderl, C Thomas, ... Clinical cancer research 23 (20), 6078-6085, 2017 | 372 | 2017 |
| Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization P Khosravi, E Kazemi, Q Zhan, JE Malmsten, M Toschi, P Zisimopoulos, ... NPJ digital medicine 2 (1), 21, 2019 | 350 | 2019 |
| The OncoPPi network of cancer-focused protein–protein interactions to inform biological insights and therapeutic strategies Z Li, AA Ivanov, R Su, V Gonzalez-Pecchi, Q Qi, S Liu, P Webber, ... Nature communications 8 (1), 14356, 2017 | 283 | 2017 |
| Glioma progression is shaped by genetic evolution and microenvironment interactions FS Varn, KC Johnson, J Martinek, JT Huse, MLP Nasrallah, P Wesseling, ... Cell 185 (12), 2184-2199. e16, 2022 | 268 | 2022 |
| The tumor microenvironment strongly impacts master transcriptional regulators and gene expression class of glioblastoma LAD Cooper, DA Gutman, C Chisolm, C Appin, J Kong, Y Rong, T Kurc, ... The American journal of pathology 180 (5), 2108-2119, 2012 | 252 | 2012 |
| Predicting clinical outcomes from large scale cancer genomic profiles with deep survival models S Yousefi, F Amrollahi, M Amgad, C Dong, JE Lewis, C Song, DA Gutman, ... Scientific reports 7 (1), 1-11, 2017 | 238 | 2017 |
| Structured crowdsourcing enables convolutional segmentation of histology images M Amgad, H Elfandy, H Hussein, LA Atteya, MAT Elsebaie, LS Abo Elnasr, ... Bioinformatics 35 (18), 3461-3467, 2019 | 233 | 2019 |
| Tumor-infiltrating lymphocytes in glioblastoma are associated with specific genomic alterations and related to transcriptional class WC Rutledge, J Kong, J Gao, DA Gutman, LAD Cooper, C Appin, Y Park, ... Clinical Cancer Research 19 (18), 4951-4960, 2013 | 214 | 2013 |
| Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data DA Gutman, J Cobb, D Somanna, Y Park, F Wang, T Kurc, JH Saltz, ... Journal of the American Medical Informatics Association 20 (6), 1091-1098, 2013 | 199 | 2013 |
| PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective LAD Cooper, EG Demicco, JH Saltz, RT Powell, A Rao, AJ Lazar The Journal of pathology 244 (5), 512-524, 2018 | 183 | 2018 |
| An expanded universe of cancer targets WC Hahn, JS Bader, TP Braun, A Califano, PA Clemons, BJ Druker, ... Cell 184 (5), 1142-1155, 2021 | 170 | 2021 |
| The digital slide archive: a software platform for management, integration, and analysis of histology for cancer research DA Gutman, M Khalilia, S Lee, M Nalisnik, Z Mullen, J Beezley, ... Cancer research 77 (21), e75-e78, 2017 | 167 | 2017 |
| The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas LAD Cooper, DA Gutman, Q Long, BA Johnson, SR Cholleti, T Kurc, ... PloS one 5 (9), e12548, 2010 | 166 | 2010 |
| Pitfalls in assessing stromal tumor infiltrating lymphocytes (sTILs) in breast cancer Z Kos, E Roblin, RS Kim, S Michiels, BD Gallas, W Chen, KK van de Vijver, ... NPJ breast cancer 6 (1), 17, 2020 | 156 | 2020 |
