Alexandre Morozov
Alexandre Morozov
Professor of Physics, Rutgers University
Verified email at - Homepage
Cited by
Cited by
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein–protein complexes
T Kortemme, AV Morozov, D Baker
Journal of molecular biology 326 (4), 1239-1259, 2003
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE
BC Foat, AV Morozov, HJ Bussemaker
Bioinformatics 22 (14), e141-e149, 2006
Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
AV Morozov, T Kortemme, K Tsemekhman, D Baker
Proceedings of the National Academy of Sciences 101 (18), 6946-6951, 2004
Gene regulation by nucleosome positioning
L Bai, AV Morozov
Trends in genetics 26 (11), 476-483, 2010
Protein–DNA binding specificity predictions with structural models
AV Morozov, JJ Havranek, D Baker, ED Siggia
Nucleic acids research 33 (18), 5781-5798, 2005
Using DNA mechanics to predict in vitro nucleosome positions and formation energies
AV Morozov, K Fortney, DA Gaykalova, VM Studitsky, J Widom, ED Siggia
Nucleic acids research 37 (14), 4707-4722, 2009
An improved protein decoy set for testing energy functions for protein structure prediction
J Tsai, R Bonneau, AV Morozov, B Kuhlman, CA Rohl, D Baker
Proteins: Structure, Function, and Bioinformatics: Structure, Function, and …, 2003
Protein–protein docking predictions for the CAPRI experiment
JJ Gray, SE Moughon, T Kortemme, O Schueler‐Furman, KMS Misura, ...
Proteins: Structure, Function, and Bioinformatics 52 (1), 118-122, 2003
Simple physical models connect theory and experiment in protein folding kinetics
E Alm, AV Morozov, T Kortemme, D Baker
Journal of molecular biology 322 (2), 463-476, 2002
Stress‐response balance drives the evolution of a network module and its host genome
C González, JCJ Ray, M Manhart, RM Adams, D Nevozhay, AV Morozov, ...
Molecular systems biology 11 (8), 827, 2015
Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster
RV Chereji, TW Kan, MK Grudniewska, AV Romashchenko, E Berezikov, ...
Nucleic acids research 44 (3), 1036-1051, 2016
Structure, stiffness and substates of the Dickerson-Drew dodecamer
T Drsata, A Pérez, M Orozco, AV Morozov, J Sponer, F Lankas
Journal of chemical theory and computation 9 (1), 707-721, 2013
Connecting protein structure with predictions of regulatory sites
AV Morozov, ED Siggia
Proceedings of the National Academy of Sciences 104 (17), 7068-7073, 2007
Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses
N Petrenko, RV Chereji, MN McClean, AV Morozov, JR Broach
Molecular biology of the cell 24 (12), 2045-2057, 2013
Potential functions for hydrogen bonds in protein structure prediction and design
AV Morozov, T Kortemme
Advances in protein chemistry 72, 1-38, 2005
High-throughput sequencing reveals a simple model of nucleosome energetics
G Locke, D Tolkunov, Z Moqtaderi, K Struhl, AV Morozov
Proceedings of the National Academy of Sciences 107 (49), 20998-21003, 2010
A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress
N Elfving, RV Chereji, V Bharatula, S Björklund, AV Morozov, JR Broach
Nucleic acids research 42 (9), 5468-5482, 2014
Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae
KA Zawadzki, AV Morozov, JR Broach
Molecular biology of the cell 20 (15), 3503-3513, 2009
Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions
RV Chereji, D Tolkunov, G Locke, AV Morozov
Physical Review E 83 (5), 050903, 2011
Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction
KMS Misura, AV Morozov, D Baker
Journal of molecular biology 342 (2), 651-664, 2004
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