| Differential regulation of β-defensin expression in human skin by microbial stimuli OE Sørensen, DR Thapa, A Rosenthal, L Liu, AA Roberts, T Ganz The Journal of Immunology 174 (8), 4870-4879, 2005 | 312 | 2005 |
| Mapping a multiplexed zoo of mRNA expression HMT Choi, CR Calvert, N Husain, D Huss, JC Barsi, BE Deverman, ... Development 143 (19), 3632-3637, 2016 | 224 | 2016 |
| Murine single-cell RNA-seq reveals cell-identity-and tissue-specific trajectories of aging JC Kimmel, L Penland, ND Rubinstein, DG Hendrickson, DR Kelley, ... Genome research 29 (12), 2088-2103, 2019 | 155 | 2019 |
| RNA-seq reveals cooperative metabolic interactions between two termite-gut spirochete species in co-culture AZ Rosenthal, EG Matson, A Eldar, JR Leadbetter The ISME journal 5 (7), 1133-1142, 2011 | 131 | 2011 |
| Directed evolution of a far-red fluorescent rhodopsin RS McIsaac, MKM Engqvist, T Wannier, AZ Rosenthal, L Herwig, ... Proceedings of the National Academy of Sciences 111 (36), 13034-13039, 2014 | 114 | 2014 |
| Metabolic interactions between dynamic bacterial subpopulations AZ Rosenthal, Y Qi, S Hormoz, J Park, SHJ Li, MB Elowitz Elife 7, e33099, 2018 | 109 | 2018 |
| Osmotic stress K Altendorf, IR Booth, JAY Gralla, JC Greie, AZ Rosenthal, JM Wood EcoSal Plus 3 (2), 10.1128/ecosalplus. 5.4. 5, 2009 | 81 | 2009 |
| Probe-based bacterial single-cell RNA sequencing predicts toxin regulation R McNulty, D Sritharan, SH Pahng, JP Meisch, S Liu, MA Brennan, ... Nature Microbiology 8 (5), 934-945, 2023 | 42 | 2023 |
| Osmolyte‐induced transcription:− 35 region elements and recognition by sigma38 (rpoS) AZ Rosenthal, M Hu, JD Gralla Molecular microbiology 59 (3), 1052-1061, 2006 | 40 | 2006 |
| Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy AZ Rosenthal, X Zhang, KS Lucey, EA Ottesen, V Trivedi, HMT Choi, ... Proceedings of the National Academy of Sciences 110 (40), 16163-16168, 2013 | 39 | 2013 |
| Regulation of transcription by acetate in Escherichia coli: in vivo and in vitro comparisons AZ Rosenthal, Y Kim, JD Gralla Molecular microbiology 68 (4), 907-917, 2008 | 26 | 2008 |
| General stress response signalling: unwrapping transcription complexes by DNA relaxation via the sigma38 C‐terminal domain YX Huo, AZ Rosenthal, JD Gralla Molecular microbiology 70 (2), 369-378, 2008 | 25 | 2008 |
| Single-cell RNA sequencing elucidates the structure and organization of microbial communities MA Brennan, AZ Rosenthal Frontiers in Microbiology 12, 713128, 2021 | 19 | 2021 |
| Poising of Escherichia coli RNA polymerase and its release from the σ38 C-terminal tail for osmY transcription AZ Rosenthal, Y Kim, JD Gralla Journal of molecular biology 376 (4), 938-949, 2008 | 19 | 2008 |
| Droplet-based single cell RNA sequencing of bacteria identifies known and previously unseen cellular states R McNulty, D Sritharan, S Liu, S Hormoz, AZ Rosenthal BioRxiv, 2021.03. 10.434868, 2021 | 16 | 2021 |
| Following evolution of bacterial antibiotic resistance in real time AZ Rosenthal, MB Elowitz Nature genetics 44 (1), 11-13, 2012 | 16 | 2012 |
| Corrigendum: Murine single-cell RNA-seq reveals cell-identity-and tissue-specific trajectories of aging JC Kimmel, L Penland, ND Rubinstein, DG Hendrickson, DR Kelley, ... Genome Research 30 (1), 1531, 2020 | 1 | 2020 |
| Genome-wide effects of selenium and translational uncoupling on transcription in the termite gut symbiont Treponema primitia EG Matson, AZ Rosenthal, X Zhang, JR Leadbetter Mbio 4 (6), 10.1128/mbio. 00869-13, 2013 | 1 | 2013 |
| ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets P Samanta, SF Cooke, R McNulty, S Hormoz, A Rosenthal Nature Protocols, 1-28, 2024 | | 2024 |
| Bacterial phenotypic heterogeneity through the lens of single-cell RNA sequencing AW Walls, AZ Rosenthal Transcription, 1-15, 2024 | | 2024 |
