Transcriptional regulatory code of a eukaryotic genome CT Harbison, DB Gordon, TI Lee, NJ Rinaldi, KD Macisaac, TW Danford, ... Nature 431 (7004), 99-104, 2004 | 2671 | 2004 |
Tissue-specific transcriptional regulation has diverged significantly between human and mouse DT Odom, RD Dowell, ES Jacobsen, W Gordon, TW Danford, ... Nature genetics 39 (6), 730-732, 2007 | 629 | 2007 |
Genotype to phenotype: a complex problem RD Dowell, O Ryan, A Jansen, D Cheung, S Agarwala, T Danford, ... Science 328 (5977), 469, 2010 | 455 | 2010 |
Core transcriptional regulatory circuitry in human hepatocytes DT Odom, RD Dowell, ES Jacobsen, L Nekludova, PA Rolfe, TW Danford, ... Molecular systems biology 2 (1), 2006 | 245 | 2006 |
Erratum: High-resolution computational models of genome binding events Y Qi, A Rolfe, KD MacIsaac, GK Gerber, D Pokholok, J Zeitlinger, ... Nature Biotechnology 24 (10), 1293, 2006 | 110* | 2006 |
High-resolution computational models of genome binding events Y Qi, A Rolfe, KD MacIsaac, GK Gerber, D Pokholok, J Zeitlinger, ... Nature biotechnology 24 (8), 963-970, 2006 | 109 | 2006 |
Zebrafish promoter microarrays identify actively transcribed embryonic genes FC Wardle, DT Odom, GW Bell, B Yuan, TW Danford, EL Wiellette, ... Genome Biology 7 (8), R71, 2006 | 93 | 2006 |
Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET D Mathur, TW Danford, LA Boyer, RA Young, DK Gifford, R Jaenisch Genome Biology 9 (8), R126, 2008 | 78 | 2008 |
GSE: a comprehensive database system for the representation, retrieval, and analysis of microarray data T Danford, A Rolfe, D Gifford Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 539, 2008 | 13 | 2008 |
Discovering Regulatory Overlapping RNA Transcripts T Danford, R Dowell, S Agarwala, P Grisafi, G Fink, D Gifford Journal of Computational Biology 18 (3), 295-303, 2011 | 4 | 2011 |
Discovering Regulatory Overlapping RNA Transcripts T Danford, R Dowell, S Agarwala, P Grisafi, G Fink, D Gifford Research in Computational Molecular Biology, 110-122, 2010 | 1 | 2010 |
Dissecting the spatial structure of overlapping transcription in budding yeast DK Gifford, TW Danford Massachusetts Institute of Technology, 2010 | | 2010 |
Integrating Genomic Conservation Data with Motif Discovery TW Danford Massachusetts Institute of Technology, Dept. of Electrical Engineering and …, 2004 | | 2004 |
Integrating genomic conservation data with motif discovery DK Gifford, TW Danford Massachusetts Institute of Technology, 2004 | | 2004 |