| Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014 | 365 | 2014 |
| Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research C Kern, Y Wang, X Xu, Z Pan, M Halstead, G Chanthavixay, P Saelao, ... Nature communications 12 (1), 1821, 2021 | 112 | 2021 |
| CTCF mediates dosage-and sequence-context-dependent transcriptional insulation by forming local chromatin domains H Huang, Q Zhu, A Jussila, Y Han, B Bintu, C Kern, M Conte, Y Zhang, ... Nature genetics 53 (7), 1064-1074, 2021 | 96 | 2021 |
| Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species C Kern, Y Wang, J Chitwood, I Korf, M Delany, H Cheng, JF Medrano, ... BMC genomics 19, 1-14, 2018 | 95 | 2018 |
| Pig genome functional annotation enhances the biological interpretation of complex traits and human disease Z Pan, Y Yao, H Yin, Z Cai, Y Wang, L Bai, C Kern, M Halstead, ... Nature Communications 12 (1), 5848, 2021 | 82 | 2021 |
| Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats RN Platt, MW Vandewege, C Kern, CJ Schmidt, FG Hoffmann, DA Ray Molecular biology and evolution 31 (6), 1536-1545, 2014 | 77 | 2014 |
| Exploring the formation of electric vehicle coalitions for vehicle-to-grid power regulation S Kamboj, K Decker, K Trnka, N Pearre, C Kern, W Kempton AAMAS workshop on agent technologies for energy systems (ATES 2010), 2010 | 63 | 2010 |
| A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues MM Halstead, C Kern, P Saelao, Y Wang, G Chanthavixay, JF Medrano, ... BMC genomics 21, 1-16, 2020 | 50 | 2020 |
| Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ... Genome research 27 (5), 686-696, 2017 | 45 | 2017 |
| Genotypic characterization of emerging avian reovirus genetic variants in California S Egaña-Labrin, R Hauck, A Figueroa, S Stoute, HL Shivaprasad, ... Scientific reports 9 (1), 9351, 2019 | 37 | 2019 |
| Integrative analysis of gut microbiome and metabolites revealed novel mechanisms of intestinal Salmonella carriage in chicken KKZ Mon, Y Zhu, G Chanthavixay, C Kern, H Zhou Scientific reports 10 (1), 4809, 2020 | 36 | 2020 |
| Functionally annotating regulatory elements in the equine genome using histone mark ChIP-Seq NB Kingsley, C Kern, C Creppe, EN Hales, H Zhou, TS Kalbfleisch, ... Genes 11 (1), 3, 2019 | 36 | 2019 |
| Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues MM Halstead, C Kern, P Saelao, G Chanthavixay, Y Wang, ME Delany, ... Scientific reports 10 (1), 5230, 2020 | 32 | 2020 |
| Knockout of IRF7 highlights its modulator function of host response against avian influenza virus and the involvement of MAPK and TOR signaling pathways in chicken TH Kim, C Kern, H Zhou Genes 11 (4), 385, 2020 | 28 | 2020 |
| Liver transcriptome responses to heat stress and Newcastle disease virus infection in genetically distinct chicken inbred lines Y Wang, P Saelao, C Kern, S Jin, RA Gallardo, T Kelly, JM Dekkers, ... Genes 11 (9), 1067, 2020 | 22 | 2020 |
| Transcript profiling of bovine embryos implicates specific transcription factors in the maternal-to-embryo transition YS Bogliotti, N Chung, EE Paulson, J Chitwood, M Halstead, C Kern, ... Biology of Reproduction 102 (3), 671-679, 2020 | 16 | 2020 |
| Bento: a toolkit for subcellular analysis of spatial transcriptomics data CK Mah, N Ahmed, NA Lopez, DC Lam, A Pong, A Monell, C Kern, Y Han, ... Genome Biology 25 (1), 82, 2024 | 15 | 2024 |
| Integrated transcriptome and histone modification analysis reveals NDV infection under heat stress affects bursa development and proliferation in susceptible chicken line G Chanthavixay, C Kern, Y Wang, P Saelao, SJ Lamont, RA Gallardo, ... Frontiers in Genetics 11, 567812, 2020 | 15 | 2020 |
| Infectious coryza: persistence, genotyping, and vaccine testing RA Gallardo, AP Da Silva, S Egaña-Labrin, S Stoute, C Kern, H Zhou, ... Avian Diseases 64 (2), 157-165, 2020 | 14 | 2020 |
| A comparative atlas of single-cell chromatin accessibility in the human brain YE Li, S Preissl, M Miller, ND Johnson, Z Wang, H Jiao, C Zhu, Z Wang, ... Science 382 (6667), eadf7044, 2023 | 13 | 2023 |
