עקוב אחר
Denis Bertrand
Denis Bertrand
Head of bioinformatics, SeqOne
כתובת אימייל מאומתת בדומיין seqone.com
כותרת
צוטט על ידי
צוטט על ידי
שנה
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
21332018
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
A Wilm, PPK Aw, D Bertrand, GHT Yeo, SH Ong, CH Wong, CC Khor, ...
Nucleic acids research 40 (22), 11189-11201, 2012
11822012
The draft genome of sweet orange (Citrus sinensis)
Q Xu, LL Chen, X Ruan, D Chen, A Zhu, C Chen, D Bertrand, WB Jiao, ...
Nature genetics 45 (1), 59-66, 2013
10422013
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
7332017
Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
ZJ Zang, I Cutcutache, SL Poon, SL Zhang, JR McPherson, J Tao, ...
Nature genetics 44 (5), 570-574, 2012
6882012
Perspective on oncogenic processes at the end of the beginning of cancer genomics
L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ...
Cell 173 (2), 305-320. e10, 2018
3512018
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
3172015
Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
D Bertrand, J Shaw, M Kalathiyappan, AHQ Ng, MS Kumar, C Li, ...
Nature biotechnology 37 (8), 937-944, 2019
2532019
The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals
RS LaRue, SR Jónsson, KAT Silverstein, M Lajoie, D Bertrand, ...
BMC molecular biology 9, 1-20, 2008
2182008
Cloning and variation of ground state intestinal stem cells
X Wang, Y Yamamoto, LH Wilson, T Zhang, BE Howitt, MA Farrow, F Kern, ...
Nature 522 (7555), 173-178, 2015
2042015
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
2032021
Critical assessment of metagenome interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1882022
The Opisthorchis viverrini genome provides insights into life in the bile duct
ND Young, N Nagarajan, SJ Lin, PK Korhonen, AR Jex, RS Hall, ...
Nature communications 5 (1), 4378, 2014
1732014
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
KR Chng, C Li, D Bertrand, AHQ Ng, JS Kwah, HM Low, C Tong, ...
Nature medicine 26 (6), 941-951, 2020
1602020
Large-scale whole-genome sequencing of three diverse Asian populations in Singapore
D Wu, J Dou, X Chai, C Bellis, A Wilm, CC Shih, WWJ Soon, N Bertin, ...
Cell 179 (3), 736-749. e15, 2019
1432019
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily
A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ...
Cell systems 7 (4), 422-437. e7, 2018
1432018
Whole-genome reconstruction and mutational signatures in gastric cancer
N Nagarajan, D Bertrand, AM Hillmer, ZJ Zang, F Yao, PÉ Jacques, ...
Genome biology 13, 1-10, 2012
1392012
Recurrent fusion genes in gastric cancer: CLDN18-ARHGAP26 induces loss of epithelial integrity
F Yao, JP Kausalya, YY Sia, ASM Teo, WH Lee, AGM Ong, Z Zhang, ...
Cell reports 12 (2), 272-285, 2015
1362015
Predicting cancer drug response using a recommender system
C Suphavilai, D Bertrand, N Nagarajan
Bioinformatics 34 (22), 3907-3914, 2018
1322018
Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles
D Bertrand, KR Chng, FG Sherbaf, A Kiesel, BKH Chia, YY Sia, SK Huang, ...
Nucleic acids research 43 (7), e44-e44, 2015
1312015
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מאמרים 1–20