Tyler A Joseph
Tyler A Joseph
PhD Student, Columbia University
Verified email at columbia.edu
Title
Cited by
Cited by
Year
FEAST: fast expectation-maximization for microbial source tracking
L Shenhav, M Thompson, TA Joseph, L Briscoe, O Furman, D Bogumil, ...
Nature Methods 16 (7), 627-632, 2019
882019
Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia
JH Marcus, C Posth, H Ringbauer, L Lai, R Skeates, C Sidore, J Beckett, ...
Nature communications 11 (1), 1-14, 2020
492020
Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus) in New York City
SE Harris, AT Xue, D Alvarado-Serrano, JT Boehm, T Joseph, ...
Biology letters 12 (4), 20150983, 2016
352016
Comparative population genomics of African montane forest mammals support population persistence across a climatic gradient and Quaternary climatic cycles
TC Demos, JC Kerbis Peterhans, TA Joseph, JD Robinson, B Agwanda, ...
PLoS One 10 (9), e0131800, 2015
302015
Inference of population structure from time-series genotype data
TA Joseph, I Pe’er
The American Journal of Human Genetics 105 (2), 317-333, 2019
102019
Inference of population structure from ancient DNA
TA Joseph, I Pe’er
International Conference on Research in Computational Molecular Biology, 90-104, 2018
102018
Demographic inference under a spatially continuous coalescent model
TA Joseph, MJ Hickerson, DF Alvarado-Serrano
Heredity 117 (2), 94-99, 2016
102016
Compositional Lotka-Volterra describes microbial dynamics in the simplex
TA Joseph, L Shenhav, JB Xavier, E Halperin, I Pe’er
PLoS computational biology 16 (5), e1007917, 2020
72020
Population history from the Neolithic to present on the Mediterranean island of Sardinia: An ancient DNA perspective
JH Marcus, C Posth, H Ringbauer, L Lai, R Skeates, C Sidore, J Beckett, ...
BioRxiv, 1-26, 2019
52019
Efficient and accurate inference of mixed microbial population trajectories from longitudinal count data
TA Joseph, AP Pasarkar, I Pe’er
Cell Systems 10 (6), 463-469. e6, 2020
42020
Urbanization shapes the demographic history of a city-dwelling native rodent
SE Harris, AT Xue, D Alvarado-Serrano, JT Boehm, T Joseph, ...
BioRxiv, 032979, 2015
32015
Directional Gaussian Mixture Models of the gut microbiome elucidate microbial spatial structure
AP Pasarkar, TA Joseph, I Pe’er
bioRxiv, 2021
2021
Methods for modeling the dynamics of microbial communities
TA Joseph
Columbia University, 2021
2021
An Introduction to Whole-Metagenome Shotgun Sequencing Studies
TA Joseph, I Pe’er
Deep Sequencing Data Analysis, 107-122, 2021
2021
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
TA Joseph, P Chlenski, T Korem, I Pe'er
bioRxiv, 2021
2021
Efficient and accurate inference of microbial trajectories from longitudinal count data
TA Joseph, AP Pasarkar, I Pe’er
International Conference on Research in Computational Molecular Biology, 255-256, 2020
2020
Latent Space Temporal Model of Microbial Abundance to Predict Domination and Bacteremia
R Zhong, T Joseph, JB Xavier, I Pe'er
arXiv preprint arXiv:1808.10795, 2018
2018
Supplementary Material: Accurate and robust inference of
TA Joseph, P Chlenski, T Korem, I Pe’er
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