| FEAST: fast expectation-maximization for microbial source tracking L Shenhav, M Thompson, TA Joseph, L Briscoe, O Furman, D Bogumil, ... Nature methods 16 (7), 627-632, 2019 | 322 | 2019 |
| Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia JH Marcus, C Posth, H Ringbauer, L Lai, R Skeates, C Sidore, J Beckett, ... Nature communications 11 (1), 939, 2020 | 128 | 2020 |
| Compositional Lotka-Volterra describes microbial dynamics in the simplex TA Joseph, L Shenhav, JB Xavier, E Halperin, I Pe’er PLoS computational biology 16 (5), e1007917, 2020 | 56 | 2020 |
| Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus) in New York City SE Harris, AT Xue, D Alvarado-Serrano, JT Boehm, T Joseph, ... Biology letters 12 (4), 20150983, 2016 | 39 | 2016 |
| Comparative population genomics of African montane forest mammals support population persistence across a climatic gradient and Quaternary climatic cycles TC Demos, JC Kerbis Peterhans, TA Joseph, JD Robinson, B Agwanda, ... PLoS One 10 (9), e0131800, 2015 | 35 | 2015 |
| Inference of population structure from time-series genotype data TA Joseph, I Pe’er The American Journal of Human Genetics 105 (2), 317-333, 2019 | 24 | 2019 |
| Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates TA Joseph, P Chlenski, A Litman, T Korem, I Pe'er Genome Research 32 (3), 558-568, 2022 | 23 | 2022 |
| Efficient and accurate inference of mixed microbial population trajectories from longitudinal count data TA Joseph, AP Pasarkar, I Pe’er Cell Systems 10 (6), 463-469. e6, 2020 | 17 | 2020 |
| An introduction to whole-metagenome shotgun sequencing studies TA Joseph, I Pe’er Deep Sequencing Data Analysis, 107-122, 2021 | 16 | 2021 |
| Genotyping, sequencing and analysis of 140,000 adults from Mexico City A Ziyatdinov, J Torres, J Alegre-Díaz, J Backman, J Mbatchou, M Turner, ... Nature 622 (7984), 784-793, 2023 | 12 | 2023 |
| Demographic inference under a spatially continuous coalescent model TA Joseph, MJ Hickerson, DF Alvarado-Serrano Heredity 117 (2), 94-99, 2016 | 12 | 2016 |
| Inference of population structure from ancient DNA TA Joseph, I Pe’er Research in Computational Molecular Biology: 22nd Annual International …, 2018 | 11 | 2018 |
| Population history from the Neolithic to present on the Mediterranean island of Sardinia: An ancient DNA perspective JH Marcus, C Posth, H Ringbauer, L Lai, R Skeates, C Sidore, J Beckett, ... BioRxiv, 583104, 2019 | 9 | 2019 |
| Genotyping, sequencing and analysis of 140,000 adults from the Mexico City Prospective Study A Ziyatdinov, J Torres, J Alegre-Díaz, J Backman, J Mbatchou, M Turner, ... bioRxiv, 2022.06. 26.495014, 2022 | 8 | 2022 |
| Directional Gaussian mixture models of the gut microbiome elucidate microbial spatial structure AP Pasarkar, TA Joseph, I Pe’er Msystems 6 (6), e00817-21, 2021 | 5 | 2021 |
| A deep catalog of protein-coding variation in 985,830 individuals KY Sun, X Bai, S Chen, S Bao, M Kapoor, C Zhang, J Backman, T Joseph, ... bioRxiv, 2023 | 3 | 2023 |
| Yield of genetic association signals from genomes, exomes, and imputation in the UK biobank SM Gaynor, T Joseph, X Bai, O Krasheninina, B Boutkov, E Maxwell, ... medRxiv, 2023.09. 13.23295479, 2023 | 3 | 2023 |
| ALS sensitive spinal motor neurons enter a degenerative downward spiral of impaired splicing and proteostasis DE Iannitelli, A Tan, E Nguyen, A Babu, SD Elorza, T Joseph, S Zaaijer, ... bioRxiv, 2022.03. 26.485939, 2022 | 2 | 2022 |
| Urbanization shapes the demographic history of a city-dwelling native rodent SE Harris, AT Xue, D Alvarado-Serrano, JT Boehm, T Joseph, ... BioRxiv, 032979, 2015 | 2 | 2015 |
| Accurate and robust inference of microbial growth dynamics from metagenomic sequencing TA Joseph, P Chlenski, T Korem, I Pe’er bioRxiv, 2021.02. 02.429365, 2021 | 1 | 2021 |
