Ron Shamir

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Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Igor UlitskyWeizmann Institute of ScienceVerified email at weizmann.ac.il
Amos TanayWeizmann InstituteVerified email at weizmann.ac.il
Ran ElkonTel Aviv UniversityVerified email at tauex.tau.ac.il
Yosef ShilohTel Aviv UniversityVerified email at post.tau.ac.il
David AmarStanford UniversityVerified email at stanford.edu
Haim KaplanSchool of Computer Science, Tel Aviv UniversityVerified email at post.tau.ac.il
Itsik Pe'erProfessor of Computer Science, Columbia UniversityVerified email at cs.columbia.edu
Irit Gat-viksTel-Aviv UniversityVerified email at tauex.tau.ac.il
Amir Ben-DorSenior Scientist, Agilent LaboratoriesVerified email at agilent.com
Yaron OrensteinSchool of Electrical and Computer EngineeringVerified email at bgu.ac.il
Martin GolumbicProfessor of Computer Science, University of HaifaVerified email at cs.haifa.ac.il
martin kupiecProfessor of Genetics, Tel Aviv UniversityVerified email at post.tau.ac.il
Michal Ozery-FlatoResearch Staff Member at IBM ResearchVerified email at il.ibm.com
Zohar YakhiniFaculty Member, Computer Science at IDC HerzeliyaVerified email at idc.ac.il
Eran HalperinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Dekel TsurDepartment of Computer Science, Ben-Gurion University of the NegevVerified email at cs.bgu.ac.il
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Jeanne LoringProfessor EmeritusVerified email at scripps.edu
Franz-Josef MüllerGroup leader, Max-Planck Institute for Molecular Genetics, Berlin; Zentrum für Integrative Psychiatrie, KielVerified email at uksh.de

Ron Shamir

Professor of Computer Science and Bioinformatics, Tel Aviv University

Verified email at tau.ac.il - Homepage

Bioinformatics computational biology algorithms digital medicine


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Clustering gene expression patterns A Ben-Dor, R Shamir, Z Yakhini Journal of computational biology 6 (3-4), 281-297, 1999	1724	1999
Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1526	2012
Network‐based prediction of protein function R Sharan, I Ulitsky, R Shamir Molecular systems biology 3 (1), 88, 2007	1220	2007
Modelling and analysis of gene regulatory networks G Karlebach, R Shamir Nature reviews Molecular cell biology 9 (10), 770-780, 2008	1197	2008
Discovering statistically significant biclusters in gene expression data A Tanay, R Sharan, R Shamir Bioinformatics 18 (suppl_1), S136-S144, 2002	1145	2002
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture LC Laurent, I Ulitsky, I Slavin, H Tran, A Schork, R Morey, C Lynch, ... Cell stem cell 8 (1), 106-118, 2011	931	2011
Quantification of protein half-lives in the budding yeast proteome A Belle, A Tanay, L Bitincka, R Shamir, EK O’Shea Proceedings of the National Academy of Sciences 103 (35), 13004-13009, 2006	772	2006
CLICK: a clustering algorithm with applications to gene expression analysis R Sharan, R Shamir Proc Int Conf Intell Syst Mol Biol 8 (307), 16, 2000	679	2000
A clustering algorithm based on graph connectivity E Hartuv, R Shamir Information processing letters 76 (4-6), 175-181, 2000	653	2000
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data A Tanay, R Sharan, M Kupiec, R Shamir Proceedings of the National Academy of Sciences 101 (9), 2981-2986, 2004	496	2004
CLICK and EXPANDER: a system for clustering and visualizing gene expression data R Sharan, A Maron-Katz, R Shamir Bioinformatics 19 (14), 1787-1799, 2003	433	2003
A faster and simpler algorithm for sorting signed permutations by reversals H Kaplan, R Shamir, RE Tarjan SIAM Journal on Computing 29 (3), 880-892, 2000	406	2000
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells R Elkon, C Linhart, R Sharan, R Shamir, Y Shiloh Genome research 13 (5), 773-780, 2003	383	2003
Regulatory networks define phenotypic classes of human stem cell lines FJ Müller, LC Laurent, D Kostka, I Ulitsky, R Williams, C Lu, IH Park, ... Nature 455 (7211), 401-405, 2008	368	2008
Identification of functional modules using network topology and high-throughput data I Ulitsky, R Shamir BMC systems biology 1 (1), 1-17, 2007	365	2007
EXPANDER–an integrative program suite for microarray data analysis R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, ... BMC bioinformatics 6 (1), 1-12, 2005	361	2005
A global view of pleiotropy and phenotypically derived gene function in yeast AM Dudley, DM Janse, A Tanay, R Shamir, GMD Church Molecular systems biology 1 (1), 2005.0001, 2005	361	2005
How prevalent is functional alternative splicing in the human genome? R Sorek, R Shamir, G Ast TRENDS in Genetics 20 (2), 68-71, 2004	355	2004
Cluster graph modification problems R Shamir, R Sharan, D Tsur Discrete Applied Mathematics 144 (1-2), 173-182, 2004	338	2004
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013	337	2013

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