Ron Shamir

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Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Igor UlitskyWeizmann Institute of ScienceVerified email at weizmann.ac.il
Yosef ShilohTel Aviv UniversityVerified email at post.tau.ac.il
Haim KaplanSchool of Computer Science, Tel Aviv UniversityVerified email at post.tau.ac.il
David AmarStanford UniversityVerified email at stanford.edu
Itsik Pe'erProfessor of Computer Science, Columbia UniversityVerified email at cs.columbia.edu
Amir Ben-DorSenior Scientist, Agilent LaboratoriesVerified email at agilent.com
Yaron OrensteinSchool of Electrical and Computer EngineeringVerified email at bgu.ac.il
Martin GolumbicProfessor of Computer Science, University of HaifaVerified email at cs.haifa.ac.il
martin kupiecProfessor of Genetics, Tel Aviv UniversityVerified email at post.tau.ac.il
Michal Ozery-FlatoResearch Staff Member at IBM ResearchVerified email at il.ibm.com
Zohar YakhiniFaculty Member, Computer Science at IDC HerzeliyaVerified email at idc.ac.il
Eran HalperinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Dekel TsurDepartment of Computer Science, Ben-Gurion University of the NegevVerified email at cs.bgu.ac.il
Jeanne LoringProfessor EmeritusVerified email at scripps.edu
Pavel PevznerProfessor of Computer Science, University of California at San DiegoVerified email at eng.ucsd.edu
Tal PupkoProfessor of Life Sciences, Tel-Aviv UniversityVerified email at post.tau.ac.il
Franz-Josef MüllerGroup leader, Max-Planck Institute for Molecular Genetics, Berlin; Zentrum für Integrative Psychiatrie, KielVerified email at uksh.de
Dvir NetanelyTel Aviv UniversityVerified email at tau.ac.il
Dan GraurUniversity of HoustonVerified email at uh.edu

Ron Shamir

Professor of Computer Science and Bioinformatics, Tel Aviv University

Verified email at tau.ac.il - Homepage

Bioinformatics computational biology algorithms


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Clustering gene expression patterns A Ben-Dor, R Shamir, Z Yakhini Journal of computational biology 6 (3-4), 281-297, 1999	1638	1999
Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1363	2012
Network‐based prediction of protein function R Sharan, I Ulitsky, R Shamir Molecular systems biology 3 (1), 88, 2007	1168	2007
Modelling and analysis of gene regulatory networks G Karlebach, R Shamir Nature reviews Molecular cell biology 9 (10), 770-780, 2008	1092	2008
Discovering statistically significant biclusters in gene expression data A Tanay, R Sharan, R Shamir Bioinformatics 18 (suppl_1), S136-S144, 2002	1091	2002
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture LC Laurent, I Ulitsky, I Slavin, H Tran, A Schork, R Morey, C Lynch, ... Cell stem cell 8 (1), 106-118, 2011	872	2011
Quantification of protein half-lives in the budding yeast proteome A Belle, A Tanay, L Bitincka, R Shamir, EK O’Shea Proceedings of the National Academy of Sciences 103 (35), 13004-13009, 2006	724	2006
A clustering algorithm based on graph connectivity E Hartuv, R Shamir Information processing letters 76 (4-6), 175-181, 2000	628	2000
CLICK: a clustering algorithm with applications to gene expression analysis R Sharan, R Shamir Proc Int Conf Intell Syst Mol Biol 8 (307), 16, 2000	509	2000
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data A Tanay, R Sharan, M Kupiec, R Shamir Proceedings of the National Academy of Sciences 101 (9), 2981-2986, 2004	473	2004
CLICK and EXPANDER: a system for clustering and visualizing gene expression data R Sharan, A Maron-Katz, R Shamir Bioinformatics 19 (14), 1787-1799, 2003	422	2003
A faster and simpler algorithm for sorting signed permutations by reversals H Kaplan, R Shamir, RE Tarjan SIAM Journal on Computing 29 (3), 880-892, 2000	402	2000
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells R Elkon, C Linhart, R Sharan, R Shamir, Y Shiloh Genome research 13 (5), 773-780, 2003	379	2003
Regulatory networks define phenotypic classes of human stem cell lines FJ Müller, LC Laurent, D Kostka, I Ulitsky, R Williams, C Lu, IH Park, ... Nature 455 (7211), 401-405, 2008	353	2008
Identification of functional modules using network topology and high-throughput data I Ulitsky, R Shamir BMC systems biology 1 (1), 1-17, 2007	351	2007
EXPANDER–an integrative program suite for microarray data analysis R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, ... BMC bioinformatics 6 (1), 1-12, 2005	348	2005
How prevalent is functional alternative splicing in the human genome? R Sorek, R Shamir, G Ast TRENDS in Genetics 20 (2), 68-71, 2004	346	2004
A global view of pleiotropy and phenotypically derived gene function in yeast AM Dudley, DM Janse, A Tanay, R Shamir, GMD Church Molecular systems biology 1 (1), 2005.0001, 2005	337	2005
Biclustering algorithms: A survey A Tanay, R Sharan, R Shamir Handbook of computational molecular biology 9 (1-20), 122-124, 2005	322	2005
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013	310	2013

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