Jean-Philippe Vert

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laurent jacobCNRS, Université Lyon 1Verified email at univ-lyon1.fr
Francis BachInria - Ecole Normale SupérieureVerified email at inria.fr
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems; Professor at ETH Zürich, and DistinguishedVerified email at tuebingen.mpg.de
Tatsuya AkutsuProfessor, Bioinformatics Center, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Emmanuel BarillotInstitut Curie, INSERM, Mines ParisTech, U900Verified email at curie.fr
Marco CuturiGoogle Brain / CREST-ENSAE.Verified email at google.com
Nelle VaroquauxCNRS, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Pierre MahébioMérieuxVerified email at biomerieux.com
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityVerified email at kuicr.kyoto-u.ac.jp
Andrei ZinovyevScientific coordinator of cancer systems biology at Institut Curie, PRAIRIE chairVerified email at curie.fr
kevin bleakleyINRIA, FranceVerified email at inria.fr
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Yoshihiro YamanishiKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Mikhail ZaslavskiyVerified email at ensmp.fr
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceVerified email at inf.ethz.ch
G StolovitzkyProgram Director, Translational Systems Biology and NanobiotechnologyVerified email at us.ibm.com
Theodoros EvgeniouINSEADVerified email at insead.edu
Jacob AbernethyAssistant Professor, University of MichiganVerified email at umich.edu

Jean-Philippe Vert

Google Brain / Mines ParisTech

Verified email at mines-paristech.fr - Homepage

machine learning computational biology statistics bioinformatics artificial intelligence


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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1361	2012
Group lasso with overlap and graph lasso L Jacob, G Obozinski, JP Vert Proceedings of the 26th annual international conference on machine learning …, 2009	981	2009
Kernel methods in computational biology B Schölkopf, K Tsuda, JP Vert MIT press, 2004	863	2004
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing N Servant, N Varoquaux, BR Lajoie, E Viara, CJ Chen, JP Vert, E Heard, ... Genome biology 16 (1), 1-11, 2015	666	2015
A community effort to assess and improve drug sensitivity prediction algorithms Nature Biotechnology 32, 1202-1212, 2014	517	2014
Clustered multitask learning: A convex relaxation L Jacob, F Bach, JP Vert Advances in Neural Information Processing Systems 21, 2009	472*	2009
Protein homology detection using string alignment kernels H Saigo, JP Vert, N Ueda, T Akutsu Bioinformatics 20 (11), 1682-1689, 2004	467	2004
Support vector machine applications in computational biology WS Noble Kernel methods in computational biology 71, 92, 2004	393	2004
A path following algorithm for the graph matching problem M Zaslavskiy, F Bach, JP Vert IEEE Transactions on Pattern Analysis and Machine Intelligence 31 (12), 2227 …, 2008	379	2008
A primer on kernel methods JP Vert, K Tsuda, B Schölkopf Kernel methods in computational biology 47, 35-70, 2004	377	2004
The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures AC Haury, P Gestraud, JP Vert PloS one 6 (12), e28210, 2011	356	2011
Protein-ligand interaction prediction: an improved chemogenomics approach L Jacob, JP Vert Bioinformatics 24 (19), 2149-2156, 2008	322	2008
Consistency of random forests E Scornet, G Biau, JP Vert Annals of Statistics 43 (4), 1716-1741, 2015	320	2015
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8 (1), 1-15, 2007	304	2007
TIGRESS: trustful inference of gene regulation using stability selection AC Haury, F Mordelet, P Vera-Licona, JP Vert BMC systems biology 6 (1), 1-17, 2012	298	2012
Protein network inference from multiple genomic data: a supervised approach Y Yamanishi, JP Vert, M Kanehisa Bioinformatics 20 (suppl_1), i363-i370, 2004	294	2004
A general and flexible method for signal extraction from single-cell RNA-seq data D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert Nature communications 9 (1), 1-17, 2018	283*	2018
A New Approach to Collaborative Filtering: Operator Estimation with Spectral Regularization. J Abernethy, F Bach, T Evgeniou, JP Vert Journal of Machine Learning Research 10 (3), 2009	280	2009
An accurate and interpretable model for siRNA efficacy prediction JP Vert, N Foveau, C Lajaunie, Y Vandenbrouck BMC bioinformatics 7 (1), 1-17, 2006	274	2006
Graph kernels based on tree patterns for molecules P Mahé, JP Vert Machine learning 75 (1), 3-35, 2009	269	2009

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