| Emergence and expansion of SARS-CoV-2 B. 1.526 after identification in New York MK Annavajhala, H Mohri, P Wang, M Nair, JE Zucker, Z Sheng, ... Nature, 1-9, 2021 | 269* | 2021 |
| Multidrug-resistant Enterobacter cloacae complex emerging as a global, diversifying threat MK Annavajhala, A Gomez-Simmonds, AC Uhlemann Frontiers in Microbiology 10, 44, 2019 | 247 | 2019 |
| Successive Emergence of Ceftazidime-Avibactam Resistance through Distinct Genomic Adaptations in blaKPC-2-Harboring Klebsiella pneumoniae Sequence Type 307 Isolates MJ Giddins, N Macesic, MK Annavajhala, S Stump, S Khan, ... Antimicrobial agents and chemotherapy 62 (3), e02101-17, 2018 | 201 | 2018 |
| Multiple pathways for SARS-CoV-2 resistance to nirmatrelvir S Iketani, H Mohri, B Culbertson, SJ Hong, Y Duan, MI Luck, ... Nature 613 (7944), 558-564, 2023 | 180 | 2023 |
| Pathogen colonization of the gastrointestinal microbiome at intensive care unit admission and risk for subsequent death or infection DE Freedberg, MJ Zhou, ME Cohen, MK Annavajhala, S Khan, ... Intensive care medicine 44 (8), 1203-1211, 2018 | 137 | 2018 |
| Comammox Functionality Identified in Diverse Engineered Biological Wastewater Treatment Systems MK Annavajhala, V Kapoor, J Santo-Domingo, K Chandran Environmental Science & Technology Letters 5 (2), 110-116, 2018 | 131 | 2018 |
| Staphylococcus aureus induces an itaconate-dominated immunometabolic response that drives biofilm formation KL Tomlinson, TWF Lung, F Dach, MK Annavajhala, SJ Gabryszewski, ... Nature communications 12 (1), 1399, 2021 | 81 | 2021 |
| Carbapenemase-producing Enterobacterales causing secondary infections during the COVID-19 crisis at a New York City hospital A Gomez-Simmonds, MK Annavajhala, TH McConville, DE Dietz, ... Journal of Antimicrobial Chemotherapy 76 (2), 380-384, 2021 | 75 | 2021 |
| Colonizing multidrug-resistant bacteria and the longitudinal evolution of the intestinal microbiome after liver transplantation MK Annavajhala, A Gomez-Simmonds, N Macesic, SB Sullivan, A Kress, ... Nature communications 10 (1), 4715, 2019 | 74 | 2019 |
| Genomic and Geographic Context for the Evolution of High-Risk Carbapenem-Resistant Enterobacter cloacae Complex Clones ST171 and ST78 A Gomez-Simmonds, MK Annavajhala, Z Wang, N Macesic, Y Hu, ... mBio 9 (3), e00542-18, 2018 | 61 | 2018 |
| Emergence of Polymyxin Resistance in Clinical Klebsiella pneumoniae Through Diverse Genetic Adaptations: A Genomic, Retrospective Cohort Study N Macesic, B Nelson, TH Mcconville, MJ Giddins, DA Green, S Stump, ... Clinical Infectious Diseases 70 (10), 2084-2091, 2020 | 55 | 2020 |
| Pretest Symptom Duration and Cycle Threshold Values for Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-Transcription Polymerase Chain Reaction Predict Coronavirus … EH Miller, J Zucker, D Castor, MK Annavajhala, JL Sepulveda, DA Green, ... Open Forum Infectious Diseases 8 (2), ofab003, 2021 | 49 | 2021 |
| Subgingival microbiome and clinical periodontal status in an elderly cohort: The WHICAP ancillary study of oral health PN Papapanou, H Park, B Cheng, A Kokaras, B Paster, S Burkett, ... Journal of Periodontology 91, S56-S67, 2020 | 45 | 2020 |
| Oral Microbiome Alterations and SARS-CoV-2 Saliva Viral Load in Patients with COVID-19 EH Miller, MK Annavajhala, AM Chong, H Park, YR Nobel, A Soroush, ... Microbiology Spectrum 9 (2), e00055-21, 2021 | 41 | 2021 |
| Estimation of COVID-19 mRNA Vaccine Effectiveness and COVID-19 Illness and Severity by Vaccination Status During Omicron BA. 4 and BA. 5 Sublineage Periods R Link-Gelles, ME Levy, K Natarajan, SE Reese, AL Naleway, SJ Grannis, ... JAMA Network Open 6 (3), e232598-e232598, 2023 | 39 | 2023 |
| CrrB Positively Regulates High-Level Polymyxin Resistance and Virulence in Klebsiella pneumoniae TH McConville, MK Annavajhala, MJ Giddins, N Macesic, CM Herrera, ... Cell Reports 33 (4), 108313, 2020 | 39 | 2020 |
| Transfusional iron overload and intravenous iron infusions modify the mouse gut microbiota similarly to dietary iron F La Carpia, BS Wojczyk, MK Annavajhala, A Rebbaa, R Culp-Hill, ... npj Biofilms and Microbiomes 5 (1), 26, 2019 | 39 | 2019 |
| Metabolic Adaptation in Methicillin-Resistant Staphylococcus aureus Pneumonia SJ Gabryszewski, TWF Lung, MK Annavajhala, KL Tomlinson, ... American Journal of Respiratory Cell and Molecular Biology 61 (2), 185, 2019 | 37 | 2019 |
| Oral and gut microbial diversity and immune regulation in patients with HIV on antiretroviral therapy MK Annavajhala, SD Khan, SB Sullivan, J Shah, L Pass, K Kister, ... Msphere 5 (1), e00798-19, 2020 | 36* | 2020 |
| Klebsiella pneumoniae induces host metabolic stress that promotes tolerance to pulmonary infection TWF Lung, D Charytonowicz, KG Beaumont, SS Shah, SH Sridhar, ... Cell Metabolism 34 (5), 761-774. e9, 2022 | 35 | 2022 |
