Gerben Menschaert
Gerben Menschaert
Biobix, Lab of Bioinformatics and Computational Genomics, FBE, Ghent University
Verified email at - Homepage
Cited by
Cited by
An update on LNCipedia: a database for annotated human lncRNA sequences
PJ Volders, K Verheggen, G Menschaert, K Vandepoele, L Martens, ...
Nucleic acids research 43 (D1), D174-D180, 2015
sORFs. org: a repository of small ORFs identified by ribosome profiling
V Olexiouk, J Crappé, S Verbruggen, K Verhegen, L Martens, ...
Nucleic acids research 44 (D1), D324-D329, 2016
PubMeth: a cancer methylation database combining text-mining and expert annotation
M Ongenaert, L Van Neste, T De Meyer, G Menschaert, S Bekaert, ...
Nucleic acids research 36 (suppl_1), D842-D846, 2007
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near …
G Menschaert, W Van Criekinge, T Notelaers, A Koch, J Crappé, ...
Molecular & cellular proteomics 12 (7), 1780-1790, 2013
An update on sORFs. org: a repository of small ORFs identified by ribosome profiling
V Olexiouk, W Van Criekinge, G Menschaert
Nucleic acids research 46 (D1), D497-D502, 2018
PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
J Crappé, E Ndah, A Koch, S Steyaert, D Gawron, S De Keulenaer, ...
Nucleic acids research 43 (5), e29-e29, 2015
N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men
P Van Damme, D Gawron, W Van Criekinge, G Menschaert
Molecular & Cellular Proteomics 13 (5), 1245-1261, 2014
Peptidomics coming of age: a review of contributions from a bioinformatics angle
G Menschaert, TTM Vandekerckhove, G Baggerman, L Schoofs, W Luyten, ...
Journal of proteome research 9 (5), 2051-2061, 2010
Standardized annotation of translated open reading frames
JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ...
Nature biotechnology 40 (7), 994-999, 2022
In search of lost small peptides
S Plaza, G Menschaert, F Payre
Annual Review of Cell and Developmental Biology 33 (1), 391-416, 2017
Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
J Crappé, W Van Criekinge, G Trooskens, E Hayakawa, W Luyten, ...
BMC genomics 14, 1-12, 2013
The salivary protein repertoire of the polyphagous spider mite Tetranychus urticae: a quest for effectors
W Jonckheere, W Dermauw, V Zhurov, N Wybouw, J Van den Bulcke, ...
Molecular & Cellular Proteomics 15 (12), 3594-3613, 2016
Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly
S Zhang, B Reljić, C Liang, B Kerouanton, JC Francisco, JH Peh, C Mary, ...
Nature communications 11 (1), 1312, 2020
Proteomics standards initiative: fifteen years of progress and future work
EW Deutsch, S Orchard, PA Binz, W Bittremieux, M Eisenacher, ...
Journal of proteome research 16 (12), 4288-4298, 2017
Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini
CH Na, MA Barbhuiya, MS Kim, S Verbruggen, SM Eacker, O Pletnikova, ...
Genome research 28 (1), 25-36, 2018
Proteogenomics from a bioinformatics angle: A growing field
G Menschaert, D Fenyö
Mass spectrometry reviews 36 (5), 584-599, 2017
Diversity in protein glycosylation among insect species
G Vandenborre, G Smagghe, B Ghesquiere, G Menschaert, ...
PloS one 6 (2), e16682, 2011
Maturation performance, offspring quality and lipidcomposition of Macrobrachium rosenbergii femalesfed increasing levels of dietary phospholipids
RO Cavalli, G Menschaert, P Lavens, P Sorgeloos
Aquaculture International 8, 41-58, 2000
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation …
A Koch, D Gawron, S Steyaert, E Ndah, J Crappé, S De Keulenaer, ...
Proteomics 14 (23-24), 2688-2698, 2014
Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing
T De Meyer, E Mampaey, M Vlemmix, S Denil, G Trooskens, JP Renard, ...
PloS one 8 (3), e59068, 2013
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