| A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013 | 1499 | 2013 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences. B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475, 2018 | 813 | 2018 |
| Pybedtools: a flexible Python library for manipulating genomic datasets and annotations RK Dale, BS Pedersen, AR Quinlan Bioinformatics 27 (24), 3423-3424, 2011 | 450 | 2011 |
| Cell type specificity of chromatin organization mediated by CTCF and cohesin C Hou, R Dale, A Dean Proceedings of the National Academy of Sciences 107 (8), 3651-3656, 2010 | 316 | 2010 |
| Practical computational reproducibility in the life sciences B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ... Cell systems 6 (6), 631-635, 2018 | 136 | 2018 |
| Sex- and Tissue-Specific Functions of Drosophila Doublesex Transcription Factor Target Genes E Clough, E Jimenez, YA Kim, C Whitworth, MC Neville, LU Hempel, ... Developmental cell 31 (6), 761-773, 2014 | 131 | 2014 |
| RNAi-independent role for Argonaute2 in CTCF/CP190 chromatin insulator function N Moshkovich, P Nisha, PJ Boyle, BA Thompson, RK Dale, EP Lei Genes & development 25 (16), 1686-1701, 2011 | 128 | 2011 |
| Role of LDB1 in the transition from chromatin looping to transcription activation I Krivega, RK Dale, A Dean Genes & development 28 (12), 1278-1290, 2014 | 121 | 2014 |
| Mediation of Drosophilaautosomal dosage effects and compensation by network interactions JH Malone, DY Cho, NR Mattiuzzo, CG Artieri, L Jiang, RK Dale, ... Genome biology 13, 1-17, 2012 | 95 | 2012 |
| Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation LQ Li, J Freudenberg, K Cui, R Dale, SH Song, A Dean, K Zhao, R Jothi, ... Blood 121 (22), 4575-4585, 2013 | 89 | 2013 |
| Regulatory roles of Escherichia coli 5'UTR and ORF-internal RNAs detected by 3'end mapping PP Adams, G Baniulyte, C Esnault, K Chegireddy, N Singh, M Monge, ... Elife 10, e62438, 2021 | 78 | 2021 |
| The LDB1 complex co-opts CTCF for erythroid lineage-specific long-range enhancer interactions J Lee, I Krivega, RK Dale, A Dean Cell reports 19 (12), 2490-2502, 2017 | 71 | 2017 |
| Spatial and temporal patterns of salinity and temperature at an intertidal groundwater seep RK Dale, DC Miller Estuarine, Coastal and Shelf Science 72 (1-2), 283-298, 2007 | 63 | 2007 |
| CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus I Junier, RK Dale, C Hou, F Képès, A Dean Nucleic acids research 40 (16), 7718-7727, 2012 | 57 | 2012 |
| Tissue-specific regulation of chromatin insulator function LH Matzat, RK Dale, N Moshkovich, EP Lei PLoS genetics 8 (11), e1003069, 2012 | 56 | 2012 |
| Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila SJ Lim, PJ Boyle, M Chinen, RK Dale, EP Lei Nucleic acids research 41 (5), 2963-2980, 2013 | 54 | 2013 |
| Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells CM Kiefer, J Lee, C Hou, RK Dale, YT Lee, ER Meier, JL Miller, A Dean Blood 118 (23), 6200-6208, 2011 | 51 | 2011 |
| Enhancer–promoter interactions can bypass CTCF-mediated boundaries and contribute to phenotypic robustness S Chakraborty, N Kopitchinski, Z Zuo, A Eraso, P Awasthi, R Chari, A Mitra, ... Nature Genetics 55 (2), 280-290, 2023 | 43 | 2023 |
| Somatic SMAD3-activating mutations cause melorheostosis by up-regulating the TGF-β/SMAD pathway H Kang, S Jha, A Ivovic, N Fratzl-Zelman, Z Deng, A Mitra, WA Cabral, ... Journal of Experimental Medicine 217 (5), 2020 | 33 | 2020 |
| The RNA-binding protein Rumpelstiltskin antagonizes gypsy chromatin insulator function in a tissue-specific manner MR King, LH Matzat, RK Dale, SJ Lim, EP Lei Journal of cell science 127 (13), 2956-2966, 2014 | 33 | 2014 |
