Ashley Irene  Teufel
Title
Cited by
Cited by
Year
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
1732012
Integrating landscape genomics and spatially explicit approaches to detect loci under selection in clinal populations
MR Jones, BR Forester, AI Teufel, RV Adams, DN Anstett, BA Goodrich, ...
Evolution 67 (12), 3455-3468, 2013
762013
Toward a general model for the evolutionary dynamics of gene duplicates
A Konrad, AI Teufel, JA Grahnen, DA Liberles
Genome biology and evolution 3, 1197-1209, 2011
522011
On the need for mechanistic models in computational genomics and metagenomics
DA Liberles, AI Teufel, L Liu, T Stadler
Genome biology and evolution 5 (10), 2008-2018, 2013
442013
Models for gene duplication when dosage balance works as a transition state to subsequent neo-or sub-functionalization
AI Teufel, L Liu, DA Liberles
BMC evolutionary biology 16 (1), 1-8, 2016
192016
Sicegar: R package for sigmoidal and double-sigmoidal curve fitting
MU Caglar, AI Teufel, CO Wilke
PeerJ 6, e4251, 2018
172018
The many nuanced evolutionary consequences of duplicated genes
AI Teufel, MM Johnson, JM Laurent, AH Kachroo, EM Marcotte, CO Wilke
Molecular biology and evolution 36 (2), 304-314, 2019
142019
Accelerated simulation of evolutionary trajectories in origin-fixation models
AI Teufel, CO Wilke
Journal of the Royal Society Interface 14 (127), 20160906, 2017
122017
Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs
JM Laurent, RK Garge, AI Teufel, CO Wilke, AH Kachroo, EM Marcotte
PLoS biology 18 (5), e3000627, 2020
11*2020
Selection on metabolic pathway function in the presence of mutation-selection-drift balance leads to rate-limiting steps that are not evolutionarily stable
A Orlenko, AI Teufel, PB Chi, DA Liberles
Biology direct 11 (1), 1-14, 2016
112016
Quantifying the relative importance of variation in predation and the environment for species coexistence
LG Shoemaker, AK Barner, LS Bittleston, AI Teufel
Ecology letters 23 (6), 939-950, 2020
9*2020
On mechanistic modeling of gene content evolution: birth-death models and mechanisms of gene birth and gene retention
AI Teufel, J Zhao, M O'Reilly, L Liu, DA Liberles
Computation 2 (3), 112-130, 2014
92014
A generalized birth and death process for modeling the fates of gene duplication
J Zhao, AI Teufel, DA Liberles, L Liu
BMC evolutionary biology 15 (1), 1-11, 2015
82015
Using the mutation-selection framework to characterize selection on protein sequences
AI Teufel, AM Ritchie, CO Wilke, DA Liberles
Genes 9 (8), 409, 2018
72018
Beyond thermodynamic constraints: evolutionary sampling generates realistic protein sequence variation
Q Jiang, AI Teufel, EL Jackson, CO Wilke
Genetics 208 (4), 1387-1395, 2018
62018
Modeling proteins at the interface of structure, evolution, and population genetics
AI Teufel, JA Grahnen, DA Liberles
Computational modeling of biological systems, 347-361, 2012
62012
Resilience and evolvability of protein-protein interaction networks
B Klein, L Holmér, KM Smith, MM Johnson, A Swain, L Stolp, AI Teufel, ...
bioRxiv, 2020
42020
What fraction of duplicates observed in recently sequenced genomes is segregating and destined to fail to fix?
AI Teufel, J Masel, DA Liberles
Genome biology and evolution 7 (8), 2258-2264, 2015
32015
Evolution and structure of proteins and proteomes
DA Liberles, AI Teufel
Genes 9 (12), 583, 2018
22018
Uncovering modeling features of viral replication dynamics from high-throughput single-cell virology experiments
AI Teufel, W Liu, JA Draghi, CE Cameron, CO Wilke
bioRxiv, 2020
12020
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Articles 1–20