Chongle Pan
Chongle Pan
Associate Professor, School of Computer Science, Department of Microbiology and Plant Biology
Verified email at ou.edu - Homepage
Title
Cited by
Cited by
Year
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease
AR Erickson, BL Cantarel, R Lamendella, Y Darzi, EF Mongodin, C Pan, ...
PloS one 7 (11), e49138, 2012
4002012
Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos
Z Li, RM Adams, K Chourey, GB Hurst, RL Hettich, C Pan
Journal of proteome research 11 (3), 1582-1590, 2012
2952012
Impact of pretreated switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis
B Raman, C Pan, GB Hurst, M Rodriguez Jr, CK McKeown, PK Lankford, ...
PloS one 4 (4), e5271, 2009
2542009
Efficient and specific trypsin digestion of microgram to nanogram quantities of proteins in organic− aqueous solvent systems
MB Strader, DL Tabb, WJ Hervey, C Pan, GB Hurst
Analytical chemistry 78 (1), 125-134, 2006
2112006
Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome
NP McNulty, M Wu, AR Erickson, C Pan, BK Erickson, EC Martens, ...
PLoS Biol 11 (8), e1001637, 2013
2082013
Metaproteomics: Harnessing the Power of High Performance Mass Spectrometry to Identify the Suite of Proteins That Control Metabolic Activities in Microbial …
RL Hettich, C Pan, K Chourey, RJ Giannone
Analytical chemistry 85 (9), 4203-4214, 2013
1582013
ProRata: a quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation
C Pan, G Kora, WH McDonald, DL Tabb, NC VerBerkmoes, GB Hurst, ...
Analytical chemistry 78 (20), 7121-7131, 2006
1082006
Improved genome annotation for Zymomonas mobilis
S Yang, KM Pappas, LJ Hauser, ML Land, GL Chen, GB Hurst, C Pan, ...
Nature biotechnology 27 (10), 893-894, 2009
982009
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
W Xiong, PE Abraham, Z Li, C Pan, RL Hettich
Proteomics 15 (20), 3424-3438, 2015
922015
Selenium-assisted nucleic acid crystallography: use of phosphoroselenoates for MAD phasing of a DNA structure
CJ Wilds, R Pattanayek, C Pan, Z Wawrzak, M Egli
Journal of the American Chemical Society 124 (50), 14910-14916, 2002
922002
MIDAS: a database-searching algorithm for metabolite identification in metabolomics
Y Wang, G Kora, BP Bowen, C Pan
Analytical chemistry 86 (19), 9496-9503, 2014
892014
Quantitative tracking of isotope flows in proteomes of microbial communities
C Pan, CR Fischer, D Hyatt, BP Bowen, RL Hettich, JF Banfield
Molecular & Cellular Proteomics 10 (4), M110. 006049, 2011
882011
Omega: an Overlap-graph de novo Assembler for Metagenomics
B Haider, TH Ahn, B Bushnell, J Chai, A Copeland, C Pan
Bioinformatics 30 (19), 2717-2722, 2014
802014
Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus
JC Young, BD Dill, C Pan, RL Hettich, JF Banfield, M Shah, C Fremaux, ...
PloS one 7 (5), e38077, 2012
792012
Sigma: strain-level inference of genomes from metagenomic analysis for biosurveillance
TH Ahn, J Chai, C Pan
Bioinformatics 31 (2), 170-177, 2015
742015
Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris by integrating transcriptomics and quantitative proteomics
C Pan, Y Oda, PK Lankford, B Zhang, NF Samatova, DA Pelletier, ...
Molecular & cellular proteomics 7 (5), 938-948, 2008
732008
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
C Pan, BH Park, WH McDonald, PA Carey, JF Banfield, NC VerBerkmoes, ...
BMC bioinformatics 11 (1), 1-14, 2010
692010
Cultivation and quantitative proteomic analyses of acidophilic microbial communities
CP Belnap, C Pan, NC VerBerkmoes, ME Power, NF Samatova, ...
The ISME journal 4 (4), 520-530, 2010
692010
Strategies for metagenomic-guided whole-community proteomics of complex microbial environments
BL Cantarel, AR Erickson, NC VerBerkmoes, BK Erickson, PA Carey, ...
PloS one 6 (11), e27173, 2011
642011
Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone
CN Butterfield, Z Li, PF Andeer, S Spaulding, BC Thomas, A Singh, ...
PeerJ 4, e2687, 2016
622016
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