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Steven Lakin
Steven Lakin
Veterinary Medical Officer, USDA APHIS NVSL FADDL
Verified email at colostate.edu - Homepage
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Cited by
Cited by
Year
MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
3312017
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
2982020
West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses
JR Fauver, ND Grubaugh, BJ Krajacich, J Weger-Lucarelli, SM Lakin, ...
Virology 498, 288-299, 2016
1222016
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5, 1-13, 2017
722017
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
Frontiers in microbiology 10, 1980, 2019
672019
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
592018
Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics
KL Huebner, JN Martin, CJ Weissend, KL Holzer, JK Parker, SM Lakin, ...
Scientific reports 9 (1), 2559, 2019
492019
Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca
A Oladeinde, K Cook, SM Lakin, R Woyda, Z Abdo, T Looft, K Herrington, ...
Applied and environmental microbiology 85 (22), e01903-19, 2019
462019
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
R Zaheer, SM Lakin, RO Polo, SR Cook, FJ Larney, PS Morley, ...
BMC microbiology 19, 1-17, 2019
412019
Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg
MG Bucher, B Zwirzitz, A Oladeinde, K Cook, C Plymel, G Zock, S Lakin, ...
Journal of Environmental Quality 49 (4), 869-881, 2020
392020
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 294, 2019
292019
Horizontal gene transfer is the main driver of antimicrobial resistance in broiler chicks infected with Salmonella enterica serovar Heidelberg
A Oladeinde, Z Abdo, MO Press, K Cook, NA Cox, B Zwirzitz, R Woyda, ...
Msystems 6 (4), 10.1128/msystems. 00729-21, 2021
122021
Litter commensal bacteria can limit the horizontal gene transfer of antimicrobial resistance to Salmonella in chickens
A Oladeinde, Z Abdo, B Zwirzitz, R Woyda, SM Lakin, MO Press, NA Cox, ...
Applied and Environmental Microbiology 88 (9), e02517-21, 2022
112022
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. Microbiome 5: 142
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
102017
II, Dabiré KR, Foy BD, Brackney DE, Ebel GD, Stenglein MD (2016) West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific …
JR Fauver, ND Grubaugh, BJ Krajacich, J Weger-Lucarelli, SM Lakin, ...
Virology 498, 288-299, 0
9
Hierarchical hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Commun Biol 2: 294
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
82019
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems. Front. Microbiol. 10: 1980
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
72019
Whole genome sequencing shows that African swine Fever virus genotype IX is still circulating in domestic pigs in all regions of Uganda
R Okwasiimire, JF Flint, EB Kayaga, S Lakin, J Pierce, RW Barrette, ...
Pathogens 12 (7), 912, 2023
62023
Demographic and histopathologic features of dogs with abnormally high concentrations of hepatic copper
TV Ullal, S Lakin, B Gallagher, N Sbardellati, Z Abdo, DC Twedt
Journal of Veterinary Internal Medicine 36 (6), 2016-2027, 2022
62022
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period. Front. Microbiol., 9: 1715
E Doster, P Rovira, RN Noyes, BA Burgess, X Yang, MD Weinroth, ...
62018
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