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Sean M. Gibbons
Sean M. Gibbons
Assistant Professor, Institute for Systems Biology
Verified email at isbscience.org - Homepage
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
6916*2019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457-463, 2017
14992017
Longitudinal analysis of microbial interaction between humans and the indoor environment
S Lax, DP Smith, J Hampton-Marcell, SM Owens, KM Handley, NM Scott, ...
Science 345 (6200), 1048-1052, 2014
7662014
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
Nature communications 8 (1), 1-10, 2017
6012017
Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism
V Leone, SM Gibbons, K Martinez, AL Hutchison, EY Huang, CM Cham, ...
Cell host & microbe 17 (5), 681-689, 2015
5622015
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...
PeerJ 2, e545, 2014
5372014
Whole-grain wheat consumption reduces inflammation in a randomized controlled trial on overweight and obese subjects with unhealthy dietary and lifestyle behaviors: role ofá…
P Vitaglione, I Mennella, R Ferracane, AA Rivellese, R Giacco, D Ercolini, ...
The American journal of clinical nutrition 101 (2), 251-261, 2015
2802015
Adaptive evolution within gut microbiomes of healthy people
S Zhao, TD Lieberman, M Poyet, KM Kauffman, SM Gibbons, M Groussin, ...
Cell host & microbe 25 (5), 656-667. e8, 2019
211*2019
Evidence for a persistent microbial seed bank throughout the global ocean
SM Gibbons, JG Caporaso, M Pirrung, D Field, R Knight, JA Gilbert
Proceedings of the National Academy of Sciences 110 (12), 4651-4655, 2013
2102013
Severe plant invasions can increase mycorrhizal fungal abundance and diversity
Y Lekberg, SM Gibbons, S Rosendahl, PW Ramsey
The ISME journal 7 (7), 1424-1433, 2013
2082013
Spatial scale drives patterns in soil bacterial diversity
SL O'Brien, SM Gibbons, SM Owens, J Hampton‐Marcell, ER Johnston, ...
Environmental microbiology 18 (6), 2039-2051, 2016
1902016
454‐sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities
Y Lekberg, T Schnoor, R Kj°ller, SM Gibbons, LH Hansen, WA Al‐Soud, ...
Journal of Ecology, 2011
1792011
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research
M Poyet, M Groussin, SM Gibbons, J Avila-Pacheco, X Jiang, SM Kearney, ...
Nature medicine 25 (9), 1442-1452, 2019
1672019
Health and disease markers correlate with gut microbiome composition across thousands of people
O Manor, CL Dai, SA Kornilov, B Smith, ND Price, JC Lovejoy, ...
Nature communications 11 (1), 1-12, 2020
1562020
Forensic analysis of the microbiome of phones and shoes
S Lax, JT Hampton-Marcell, SM Gibbons, GB Colares, D Smith, JA Eisen, ...
Microbiome 3 (1), 1-8, 2015
1502015
Human and environmental impacts on river sediment microbial communities
SM Gibbons, E Jones, A Bearquiver, F Blackwolf, W Roundstone, N Scott, ...
PloS one 9 (5), e97435, 2014
1362014
Characterization of the salivary microbiome in patients with pancreatic cancer
PJ Torres, EM Fletcher, SM Gibbons, M Bouvet, KS Doran, ST Kelley
PeerJ 3, e1373, 2015
1292015
Blood metabolome predicts gut microbiome α-diversity in humans
T Wilmanski, N Rappaport, JC Earls, AT Magis, O Manor, J Lovejoy, ...
Nature biotechnology 37 (10), 1217-1228, 2019
1282019
Microbial diversity—exploration of natural ecosystems and microbiomes
SM Gibbons, JA Gilbert
Current opinion in genetics & development 35, 66-72, 2015
1212015
Use and abuse of correlation analyses in microbial ecology
A Carr, C Diener, NS Baliga, SM Gibbons
The ISME journal 13 (11), 2647-2655, 2019
1122019
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Articles 1–20