עקוב אחר
Mikaela Koutrouli
Mikaela Koutrouli
Novo Nordisk Foundation Center for Protein Research
כתובת אימייל מאומתת בדומיין cpr.ku.dk
כותרת
צוטט על ידי
צוטט על ידי
שנה
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest‏
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...‏
Nucleic Acids Research 51 (D1), D638-D646, 2023‏
11612023
A guide to conquer the biological network era using graph theory‏
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos‏
Frontiers in bioengineering and biotechnology 8, 34, 2020‏
2072020
The scverse project provides a computational ecosystem for single-cell omics data analysis‏
I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ...‏
Nature biotechnology 41 (5), 604-606, 2023‏
572023
The STRING database in 2023: Protein-protein association networks and functional enrichment analyses for any sequenced genome of interest., 2023, 51, pp‏
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...‏
D638-D646. DOI: https://doi. org/10.1093/nar/gkac1000, 0‏
27
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review‏
FA Baltoumas, S Zafeiropoulou, E Karatzas, M Koutrouli, F Thanati, ...‏
Biomolecules 11 (8), 1245, 2021‏
162021
NORMA: the network makeup artist—a web tool for network annotation visualization‏
M Koutrouli, E Karatzas, K Papanikolopoulou, GA Pavlopoulos‏
Genomics, Proteomics and Bioinformatics 20 (3), 578-586, 2022‏
102022
Exploring Networks in the STRING and Reactome Database‏
M Koutrouli, P Hatzis, GA Pavlopoulos‏
Academic Press, 2021‏
92021
A Guide to Conquer the Biological Network Era Using Graph Theory. Front Bioeng Biotechnol 2020; 8: 34‏
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos‏
72020
FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data‏
M Koutrouli, K Nastou, P Piera Líndez, R Bouwmeester, S Rasmussen, ...‏
Bioinformatics 40 (2), btae010, 2024‏
52024
The network makeup artist (NORMA-2.0): Distinguishing annotated groups in a network using innovative layout strategies‏
E Karatzas, M Koutrouli, FA Baltoumas, K Papanikolopoulou, ...‏
Bioinformatics Advances 2 (1), vbac036, 2022‏
52022
Systems Medicine‏
M Koutrouli, P Hatzis, GA Pavlopoulos‏
52021
The Network Analysis Profiler (NAP v2. 0): A web tool for visual topological comparison between multiple networks‏
M Koutrouli, T Theodosiou, I Iliopoulos, G Pavlopoulos‏
EMBnet.journal 26, e943, 2021‏
32021
U-CIE [/juː'siː/]: Color encoding of high-dimensional data‏
M Koutrouli, JH Morris, LJ Jensen‏
22021
Corrigendum: A guide to conquer the biological network era using graph theory‏
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos‏
Frontiers in Bioengineering and Biotechnology 11, 2023‏
12023
Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip‏
X Ding, K Hoff, R Swaminathan, S Pollom, T Huang, X Li, G Zhou, Z Bai, ...‏
bioRxiv, 2024.01. 08.574734, 2024‏
2024
Spatial Transcriptomics Sequencing of Mouse Liver at 2 Micron Resolution Using a Novel Spatial DNA Chip‏
X Ding, K Hoff, R Swaminathan, S Pollom, T Huang, X Li, G Zhou, Z Bai, ...‏
2024
Improving dictionary-based named entity recognition with deep learning‏
K Nastou, M Koutrouli, S Pyysalo, LJ Jensen‏
bioRxiv, 2023.12. 10.570777, 2023‏
2023
המערכת אינה יכולה לבצע את הפעולה כעת. נסה שוב מאוחר יותר.
מאמרים 1–17