Genome-wide enhancer maps link risk variants to disease genes J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ... Nature 593 (7858), 238-243, 2021 | 367 | 2021 |
Progressive immune dysfunction with advancing disease stage in renal cell carcinoma DA Braun, K Street, KP Burke, DL Cookmeyer, T Denize, CB Pedersen, ... Cancer Cell 39 (5), 632-648. e8, 2021 | 264 | 2021 |
Monitoring T cell–dendritic cell interactions in vivo by intercellular enzymatic labelling G Pasqual, A Chudnovskiy, JMJ Tas, M Agudelo, LD Schweitzer, A Cui, ... Nature 553 (7689), 496-500, 2018 | 189 | 2018 |
Genome-wide CRISPR screen identifies host dependency factors for influenza A virus infection B Li, SM Clohisey, BS Chia, B Wang, A Cui, T Eisenhaure, LD Schweitzer, ... Nature communications 11 (1), 164, 2020 | 161 | 2020 |
Fine-mapping the MHC locus in juvenile idiopathic arthritis (JIA) reveals genetic heterogeneity corresponding to distinct adult inflammatory arthritic diseases A Hinks, J Bowes, J Cobb, HC Ainsworth, MC Marion, ME Comeau, ... Annals of the rheumatic diseases 76 (4), 765-772, 2017 | 123 | 2017 |
Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection C Bohannon, R Powers, L Satyabhama, A Cui, C Tipton, M Michaeli, ... Nature communications 7 (1), 11826, 2016 | 109 | 2016 |
Computational purification of individual tumor gene expression profiles leads to significant improvements in prognostic prediction G Quon, S Haider, AG Deshwar, A Cui, PC Boutros, Q Morris Genome medicine 5, 1-20, 2013 | 106 | 2013 |
A model of somatic hypermutation targeting in mice based on high-throughput Ig sequencing data A Cui, R Di Niro, JA Vander Heiden, AW Briggs, K Adams, T Gilbert, ... The Journal of Immunology 197 (9), 3566-3574, 2016 | 74 | 2016 |
Differentiation of exhausted CD8+ T cells after termination of chronic antigen stimulation stops short of achieving functional T cell memory P Tonnerre, D Wolski, S Subudhi, J Aljabban, RC Hoogeveen, ... Nature immunology 22 (8), 1030-1041, 2021 | 71 | 2021 |
Low protease activity in B cell follicles promotes retention of intact antigens after immunization A Aung, A Cui, L Maiorino, AP Amini, JR Gregory, M Bukenya, Y Zhang, ... Science 379 (6630), eabn8934, 2023 | 35 | 2023 |
Reprogramming NK cells and macrophages via combined antibody and cytokine therapy primes tumors for elimination by checkpoint blockade C Wang, A Cui, M Bukenya, A Aung, D Pradhan, CA Whittaker, Y Agarwal, ... Cell reports 37 (8), 2021 | 24 | 2021 |
Single-cell atlas of the liver myeloid compartment before and after cure of chronic viral hepatitis A Cui, B Li, MS Wallace, ALK Gonye, C Oetheimer, H Patel, P Tonnerre, ... Journal of Hepatology 80 (2), 251-267, 2024 | 16 | 2024 |
Dictionary of immune responses to cytokines at single-cell resolution A Cui, T Huang, S Li, A Ma, JL Pérez, C Sander, DB Keskin, CJ Wu, ... Nature 625 (7994), 377-384, 2024 | 15 | 2024 |
Gene expression deconvolution for uncovering molecular signatures in response to therapy in juvenile idiopathic arthritis A Cui, G Quon, AM Rosenberg, RSM Yeung, Q Morris, ... PloS one 11 (5), e0156055, 2016 | 14 | 2016 |
Genome-wide maps of enhancer regulation connect risk variants to disease genes J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ... bioRxiv, 2020.09. 01.278093, 2020 | 13 | 2020 |
Genome-wide CRISPR screen identifies host dependency factors for influenza A virus infection. Nat Commun 11: 164 B Li, SM Clohisey, BS Chia, B Wang, A Cui, T Eisenhaure, LD Schweitzer, ... | 13 | 2020 |
Loss of the nuclear protein RTF2 enhances influenza virus replication BS Chia, B Li, A Cui, T Eisenhaure, R Raychowdhury, D Lieb, N Hacohen Journal of Virology 94 (22), 10.1128/jvi. 00319-20, 2020 | 5 | 2020 |
Proximity-dependent labeling identifies dendritic cells that prime the antitumor CD4+ T cell response A Chudnovskiy, S Nakandakari-Higa, TBR Castro, A Cui, CH Lin, ... bioRxiv, 2022.10. 25.513771, 2022 | 4 | 2022 |
Spatially regulated protease activity in lymph nodes renders B cell follicles a sanctuary for retention of intact antigens A Aung, A Cui, AP Soleimany, M Bukenya, H Lee, CA Cottrell, M Silva, ... bioRxiv, 2021.11. 15.468669, 2021 | 3 | 2021 |
Sex-Biased Aging Effects on Ig Somatic Hypermutation Targeting A Cui, DG Chawla, SH Kleinstein The Journal of Immunology 206 (1), 101-108, 2021 | 2 | 2021 |