|Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity|
LI Jia, BP Berman, U Jariwala, X Yan, JP Cogan, A Walters, T Chen, ...
PloS one 3 (11), e3645, 2008
|Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis|
TS Adams, JC Schupp, S Poli, EA Ayaub, N Neumark, F Ahangari, ...
Science advances 6 (28), eaba1983, 2020
|T cell-intrinsic role of IL-6 signaling in primary and memory responses|
SA Nish, D Schenten, FT Wunderlich, SD Pope, Y Gao, N Hoshi, S Yu, ...
elife 3, e01949, 2014
|Signaling through the adaptor molecule MyD88 in CD4+ T cells is required to overcome suppression by regulatory T cells|
D Schenten, SA Nish, S Yu, X Yan, HK Lee, I Brodsky, L Pasman, B Yordy, ...
Immunity 40 (1), 78-90, 2014
|Polysomnographic phenotypes and their cardiovascular implications in obstructive sleep apnoea|
AV Zinchuk, S Jeon, BB Koo, X Yan, DM Bravata, L Qin, BJ Selim, ...
Thorax 73 (5), 472-480, 2018
|An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge|
CA Brownstein, AH Beggs, N Homer, B Merriman, WY Timothy, ...
Genome biology 15 (3), 1-18, 2014
|Noninvasive analysis of the sputum transcriptome discriminates clinical phenotypes of asthma|
X Yan, JH Chu, J Gomez, M Koenigs, C Holm, X He, MF Perez, H Zhao, ...
American journal of respiratory and critical care medicine 191 (10), 1116-1125, 2015
|Inferring activity changes of transcription factors by binding association with sorted expression profiles|
C Cheng, X Yan, F Sun, LM Li
BMC bioinformatics 8 (1), 452, 2007
|Validation of a 52-gene risk profile for outcome prediction in patients with idiopathic pulmonary fibrosis: an international, multicentre, cohort study|
JD Herazo-Maya, J Sun, PL Molyneaux, Q Li, JA Villalba, A Tzouvelekis, ...
The Lancet Respiratory Medicine 5 (11), 857-868, 2017
|Detecting differentially expressed genes by relative entropy|
X Yan, M Deng, WK Fung, M Qian
Journal of theoretical biology 234 (3), 395-402, 2005
|Transcriptional regulatory model of fibrosis progression in the human lung|
JE McDonough, F Ahangari, Q Li, S Jain, SE Verleden, J Herazo-Maya, ...
JCI insight 4 (22), 2019
|Characterisation of asthma subgroups associated with circulating YKL-40 levels|
JL Gomez, X Yan, CT Holm, N Grant, Q Liu, L Cohn, V Nezgovorova, ...
European Respiratory Journal 50 (4), 2017
|Progressive recruitment of Runx2 to genomic targets despite decreasing expression during osteoblast differentiation|
S Pregizer, SK Baniwal, X Yan, Z Borok, B Frenkel
Journal of cellular biochemistry 105 (4), 965-970, 2008
|Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic …|
M Vukmirovic, JD Herazo-Maya, J Blackmon, V Skodric-Trifunovic, ...
BMC pulmonary medicine 17 (1), 1-12, 2017
|On optimal pooling designs to identify rare variants through massive resequencing|
JS Lee, M Choi, X Yan, RP Lifton, H Zhao
Genetic Epidemiology 35 (3), 139-147, 2011
|Plasmacytoid dendritic cells, interferon signaling, and FcγR contribute to pathogenesis and therapeutic response in childhood immune thrombocytopenia|
K Sehgal, X Guo, S Koduru, A Shah, A Lin, X Yan, KM Dhodapkar
Science translational medicine 5 (193), 193ra89-193ra89, 2013
|Testing gene set enrichment for subset of genes: Sub-GSE|
X Yan, F Sun
BMC bioinformatics 9 (1), 362, 2008
|Modeling RNA degradation for RNA-Seq with applications|
L Wan, X Yan, T Chen, F Sun
Biostatistics 13 (4), 734-747, 2012
|Single-cell omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19|
A Unterman, TS Sumida, N Nouri, X Yan, AY Zhao, V Gasque, JC Schupp, ...
|MARD: a new method to detect differential gene expression in treatment-control time courses|
C Cheng, X Ma, X Yan, F Sun, LM Li
Bioinformatics 22 (21), 2650-2657, 2006