| Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity LI Jia, BP Berman, U Jariwala, X Yan, JP Cogan, A Walters, T Chen, ... PloS one 3 (11), e3645, 2008 | 163 | 2008 |
| Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis TS Adams, JC Schupp, S Poli, EA Ayaub, N Neumark, F Ahangari, ... Science advances 6 (28), eaba1983, 2020 | 121 | 2020 |
| T cell-intrinsic role of IL-6 signaling in primary and memory responses SA Nish, D Schenten, FT Wunderlich, SD Pope, Y Gao, N Hoshi, S Yu, ... elife 3, e01949, 2014 | 105 | 2014 |
| Signaling through the adaptor molecule MyD88 in CD4+ T cells is required to overcome suppression by regulatory T cells D Schenten, SA Nish, S Yu, X Yan, HK Lee, I Brodsky, L Pasman, B Yordy, ... Immunity 40 (1), 78-90, 2014 | 104 | 2014 |
| Polysomnographic phenotypes and their cardiovascular implications in obstructive sleep apnoea AV Zinchuk, S Jeon, BB Koo, X Yan, DM Bravata, L Qin, BJ Selim, ... Thorax 73 (5), 472-480, 2018 | 103 | 2018 |
| An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge CA Brownstein, AH Beggs, N Homer, B Merriman, WY Timothy, ... Genome biology 15 (3), 1-18, 2014 | 97 | 2014 |
| Noninvasive analysis of the sputum transcriptome discriminates clinical phenotypes of asthma X Yan, JH Chu, J Gomez, M Koenigs, C Holm, X He, MF Perez, H Zhao, ... American journal of respiratory and critical care medicine 191 (10), 1116-1125, 2015 | 72 | 2015 |
| Inferring activity changes of transcription factors by binding association with sorted expression profiles C Cheng, X Yan, F Sun, LM Li BMC bioinformatics 8 (1), 452, 2007 | 66 | 2007 |
| Validation of a 52-gene risk profile for outcome prediction in patients with idiopathic pulmonary fibrosis: an international, multicentre, cohort study JD Herazo-Maya, J Sun, PL Molyneaux, Q Li, JA Villalba, A Tzouvelekis, ... The Lancet Respiratory Medicine 5 (11), 857-868, 2017 | 60 | 2017 |
| Detecting differentially expressed genes by relative entropy X Yan, M Deng, WK Fung, M Qian Journal of theoretical biology 234 (3), 395-402, 2005 | 45 | 2005 |
| Transcriptional regulatory model of fibrosis progression in the human lung JE McDonough, F Ahangari, Q Li, S Jain, SE Verleden, J Herazo-Maya, ... JCI insight 4 (22), 2019 | 39 | 2019 |
| Characterisation of asthma subgroups associated with circulating YKL-40 levels JL Gomez, X Yan, CT Holm, N Grant, Q Liu, L Cohn, V Nezgovorova, ... European Respiratory Journal 50 (4), 2017 | 39 | 2017 |
| Progressive recruitment of Runx2 to genomic targets despite decreasing expression during osteoblast differentiation S Pregizer, SK Baniwal, X Yan, Z Borok, B Frenkel Journal of cellular biochemistry 105 (4), 965-970, 2008 | 27 | 2008 |
| Identification and validation of differentially expressed transcripts by RNA-sequencing of formalin-fixed, paraffin-embedded (FFPE) lung tissue from patients with Idiopathic … M Vukmirovic, JD Herazo-Maya, J Blackmon, V Skodric-Trifunovic, ... BMC pulmonary medicine 17 (1), 1-12, 2017 | 24 | 2017 |
| On optimal pooling designs to identify rare variants through massive resequencing JS Lee, M Choi, X Yan, RP Lifton, H Zhao Genetic Epidemiology 35 (3), 139-147, 2011 | 24 | 2011 |
| Plasmacytoid dendritic cells, interferon signaling, and FcγR contribute to pathogenesis and therapeutic response in childhood immune thrombocytopenia K Sehgal, X Guo, S Koduru, A Shah, A Lin, X Yan, KM Dhodapkar Science translational medicine 5 (193), 193ra89-193ra89, 2013 | 23 | 2013 |
| Testing gene set enrichment for subset of genes: Sub-GSE X Yan, F Sun BMC bioinformatics 9 (1), 362, 2008 | 23 | 2008 |
| Modeling RNA degradation for RNA-Seq with applications L Wan, X Yan, T Chen, F Sun Biostatistics 13 (4), 734-747, 2012 | 21 | 2012 |
| Single-cell omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19 A Unterman, TS Sumida, N Nouri, X Yan, AY Zhao, V Gasque, JC Schupp, ... medRxiv, 2020 | 15 | 2020 |
| MARD: a new method to detect differential gene expression in treatment-control time courses C Cheng, X Ma, X Yan, F Sun, LM Li Bioinformatics 22 (21), 2650-2657, 2006 | 12 | 2006 |
