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Charles Vaske
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Year
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
73422012
Integrated genomic analyses of ovarian carcinoma
Cancer Genome Atlas Research Network
Nature 474 (7353), 609, 2011
67672011
Comprehensive genomic characterization of squamous cell lung cancers
Cancer Genome Atlas Research Network
Nature 489 (7417), 519, 2012
36282012
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM
CJ Vaske, SC Benz, JZ Sanborn, D Earl, C Szeto, J Zhu, D Haussler, ...
Bioinformatics 26 (12), i237-i245, 2010
8632010
Voltage-Gated Na+ Channel SCN5A Is a Key Regulator of a Gene Transcriptional Network That Controls Colon Cancer Invasion
CD House, CJ Vaske, AM Schwartz, V Obias, B Frank, T Luu, ...
Cancer research 70 (17), 6957-6967, 2010
3072010
Transcriptional programming of normal and inflamed human epidermis at single-cell resolution
JB Cheng, AJ Sedgewick, AI Finnegan, P Harirchian, J Lee, S Kwon, ...
Cell reports 25 (4), 871-883, 2018
2152018
Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing
MCW Lee, FJ Lopez-Diaz, SY Khan, MA Tariq, Y Dayn, CJ Vaske, ...
Proceedings of the National Academy of Sciences 111 (44), E4726-E4735, 2014
2082014
Integrated molecular profiles of invasive breast tumors and ductal carcinoma in situ (DCIS) reveal differential vascular and interleukin signaling
VN Kristensen, CJ Vaske, J Ursini-Siegel, P Van Loo, SH Nordgard, ...
Proceedings of the National Academy of Sciences 109 (8), 2802-2807, 2012
2002012
JARID1B is a luminal lineage-driving oncogene in breast cancer
S Yamamoto, Z Wu, HG Russnes, S Takagi, G Peluffo, C Vaske, X Zhao, ...
Cancer cell 25 (6), 762-777, 2014
1872014
Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome
MR Aure, V Vitelli, S Jernström, S Kumar, M Krohn, EU Due, TH Haukaas, ...
Breast Cancer Research 19, 1-18, 2017
1022017
Method of providing a treatment to a subject based on a dynamic pathway map
CJ Vaske, SC Benz, JM Stuart, D Haussler
US Patent 10,770,169, 2020
93*2020
A deep learning image-based intrinsic molecular subtype classifier of breast tumors reveals tumor heterogeneity that may affect survival
MI Jaber, B Song, C Taylor, CJ Vaske, SC Benz, S Rabizadeh, ...
Breast Cancer Research 22, 1-10, 2020
812020
Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma
JP North, J Golovato, CJ Vaske, JZ Sanborn, A Nguyen, W Wu, B Goode, ...
Nature communications 9 (1), 1894, 2018
742018
The UCSC cancer genomics browser: update 2011
JZ Sanborn, SC Benz, B Craft, C Szeto, KM Kober, L Meyer, CJ Vaske, ...
Nucleic acids research 39 (suppl_1), D951-D959, 2011
732011
Lymphocyte Invasion in IC10/Basal-Like Breast Tumors Is Associated with Wild-Type TP53
D Quigley, L Silwal-Pandit, R Dannenfelser, A Langerød, HKM Vollan, ...
Molecular Cancer Research 13 (3), 493-501, 2015
682015
Healthcare object recognition systems and methods
P Soon-Shiong, JZ Sanborn, SC Benz, CJ Vaske
US Patent 9,824,184, 2017
652017
Gene prediction and verification in a compact genome with numerous small introns
AE Tenney, RH Brown, C Vaske, JK Lodge, TL Doering, MR Brent
Genome research 14 (11), 2330-2335, 2004
582004
MDM2-Containing Double Minute Chromosomes And Methods Therefore
JZ Sanborn, CJ Vaske, SC Benz
US Patent App. 14/363,789, 2014
532014
A factor graph nested effects model to identify networks from genetic perturbations
CJ Vaske, C House, T Luu, B Frank, CH Yeang, NH Lee, JM Stuart
PLoS computational biology 5 (1), e1000274, 2009
452009
Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM
AJ Sedgewick, SC Benz, S Rabizadeh, P Soon-Shiong, CJ Vaske
Bioinformatics 29 (13), i62-i70, 2013
422013
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Articles 1–20