Wei Shi
Wei Shi
Professor, Olivia Newton-John Cancer Research Institute
Verified email at onjcri.org.au - Homepage
Title
Cited by
Cited by
Year
limma powers differential expression analyses for RNA-sequencing and microarray studies
ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth
Nucleic acids research 43 (7), e47-e47, 2015
125442015
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Y Liao, GK Smyth, W Shi
Bioinformatics 30 (7), 923-30, 2014
75092014
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts
CW Law, Y Chen, W Shi, GK Smyth
Genome Biology 15 (2), R29, 2014
31542014
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Y Liao, GK Smyth, W Shi
Nucleic Acids Research 41 (10), e108, 2013
16632013
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
SEQC Consortium
Nature biotechnology 32 (9), 903, 2014
6022014
The transcription factors Blimp-1 and IRF4 jointly control the differentiation and function of effector regulatory T cells
E Cretney, A Xin, W Shi, M Minnich, F Masson, M Miasari, GT Belz, ...
Nature immunology 12 (4), 304-311, 2011
5102011
Hobit and Blimp1 instruct a universal transcriptional program of tissue residency in lymphocytes
LK Mackay, M Minnich, NAM Kragten, Y Liao, B Nota, C Seillet, A Zaid, ...
Science 352 (6284), 459-463, 2016
4852016
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
Y Liao, GK Smyth, W Shi
Nucleic acids research 47 (8), e47-e47, 2019
4562019
The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue–resident regulatory T cells
A Vasanthakumar, K Moro, A Xin, Y Liao, R Gloury, S Kawamoto, ...
Nature immunology 16 (3), 276-285, 2015
3852015
The transcription factor IRF4 is essential for TCR affinity–mediated metabolic programming and clonal expansion of T cells
K Man, M Miasari, W Shi, A Xin, DC Henstridge, S Preston, M Pellegrini, ...
Nature immunology 14 (11), 1155, 2013
2972013
Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells
W Shi, Y Liao, SN Willis, N Taubenheim, M Inouye, DM Tarlinton, ...
Nature immunology 16 (6), 663-673, 2015
2422015
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2252015
Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
W Shi, A Oshlack, GK Smyth
Nucleic acids research 38 (22), e204-e204, 2010
2162010
Blimp-1 controls plasma cell function through the regulation of immunoglobulin secretion and the unfolded protein response
J Tellier, W Shi, M Minnich, Y Liao, S Crawford, GK Smyth, A Kallies, ...
Nature immunology 17 (3), 323-330, 2016
2102016
Blocking IL-6 trans-signaling prevents high-fat diet-induced adipose tissue macrophage recruitment but does not improve insulin resistance
MJ Kraakman, HL Kammoun, TL Allen, V Deswaerte, DC Henstridge, ...
Cell metabolism 21 (3), 403-416, 2015
1922015
Targeting antigen to mouse dendritic cells via Clec9A induces potent CD4 T cell responses biased toward a follicular helper phenotype
MH Lahoud, F Ahmet, S Kitsoulis, S San Wan, D Vremec, CN Lee, ...
The Journal of Immunology 187 (2), 842-850, 2011
1852011
Complementarity and redundancy of IL-22-producing innate lymphoid cells
LC Rankin, MJH Girard-Madoux, C Seillet, LA Mielke, Y Kerdiles, A Fenis, ...
Nature immunology 17 (2), 179-186, 2016
1752016
CIS is a potent checkpoint in NK cell–mediated tumor immunity
RB Delconte, TB Kolesnik, LF Dagley, J Rautela, W Shi, EM Putz, ...
Nature Immunology 17 (7), 816-824, 2016
1702016
Transcription factor IRF4 promotes CD8+ T cell exhaustion and limits the development of memory-like T cells during chronic infection
K Man, SS Gabriel, Y Liao, R Gloury, S Preston, DC Henstridge, ...
Immunity 47 (6), 1129-1141. e5, 2017
1692017
HDAC inhibitors induce tumor-cell-selective pro-apoptotic transcriptional responses
JE Bolden, W Shi, K Jankowski, CY Kan, L Cluse, BP Martin, ...
Cell Death & Disease 4 (2), e519, 2013
1672013
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