| Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma CP Kubicek, A Herrera-Estrella, V Seidl-Seiboth, DA Martinez, ... Genome biology 12 (4), R40, 2011 | 478 | 2011 |
| Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi RA Ohm, N Feau, B Henrissat, CL Schoch, BA Horwitz, KW Barry, ... PLoS Pathog 8 (12), e1003037, 2012 | 430 | 2012 |
| RBPmap: a web server for mapping binding sites of RNA-binding proteins I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund Nucleic acids research 42 (W1), W361-W367, 2014 | 243 | 2014 |
| Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection DA Martinez, BG Oliver, Y Gräser, JM Goldberg, W Li, NM Martinez-Rossi, ... MBio 3 (5), 2012 | 160 | 2012 |
| Cross-tissue analysis of gene and protein expression in normal and cancer tissues I Kosti, N Jain, D Aran, AJ Butte, M Sirota Scientific reports 6 (1), 1-16, 2016 | 100 | 2016 |
| SFmap: a web server for motif analysis and prediction of splicing factor binding sites I Paz, M Akerman, I Dror, I Kosti, Y Mandel-Gutfreund Nucleic acids research 38 (suppl_2), W281-W285, 2010 | 90 | 2010 |
| Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches NC Edwards, ZA Hing, A Perry, A Blaisdell, DB Kopelman, R Fathke, ... PLoS One 7 (6), e38864, 2012 | 54 | 2012 |
| Comparative analysis of fungal protein kinases and associated domains I Kosti, Y Mandel-Gutfreund, F Glaser, BA Horwitz BMC genomics 11 (1), 133, 2010 | 47 | 2010 |
| A diverse epigenetic landscape at human exons with implication for expression M Singer, I Kosti, L Pachter, Y Mandel-Gutfreund Nucleic acids research 43 (7), 3498-3508, 2015 | 46 | 2015 |
| The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability SK Gupta, I Kosti, G Plaut, A Pivko, ID Tkacz, S Cohen-Chalamish, ... Nucleic acids research 41 (13), 6577-6594, 2013 | 35 | 2013 |
| Myofibril breakdown during atrophy is a delayed response requiring the transcription factor PAX4 and desmin depolymerization A Volodin, I Kosti, AL Goldberg, S Cohen Proceedings of the National Academy of Sciences 114 (8), E1375-E1384, 2017 | 25 | 2017 |
| ARTS, the unusual septin: structural and functional aspects Y Mandel-Gutfreund, I Kosti, S Larisch Biological chemistry 392 (8-9), 783-790, 2011 | 22 | 2011 |
| Meta-analysis of maternal and fetal transcriptomic data elucidates the role of adaptive and innate immunity in preterm birth B Vora, A Wang, I Kosti, H Huang, I Paranjpe, TJ Woodruff, T MacKenzie, ... Frontiers in immunology 9, 993, 2018 | 21 | 2018 |
| Global transcriptome analysis of RNA abundance regulation by ADAR in lung adenocarcinoma MF Sharpnack, B Chen, D Aran, I Kosti, DD Sharpnack, DP Carbone, ... EBioMedicine 27, 167-175, 2018 | 15 | 2018 |
| An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors I Kosti, P Radivojac, Y Mandel-Gutfreund PLoS Comput Biol 8 (7), e1002603, 2012 | 15 | 2012 |
| 11 Trichoderma Genomes: A Vast Reservoir of Potential Elicitor Proteins BA Horwitz, I Kosti, F Glaser, M Mukherjee Trichoderma: Biology and Applications, 195, 2013 | 7 | 2013 |
| Meta-Analysis of Vaginal Microbiome Data Provides New Insights Into Preterm Birth I Kosti, S Lyalina, KS Pollard, AJ Butte, M Sirota Frontiers in Microbiology 11, 476, 2020 | 3 | 2020 |
| An interactive tool for comparing lists with Venn diagrams. BioinfoGP A Ohm Robin, F Nicolas, H Bernard, L Schoch Conrad, ... | 2 | |
| Data Integration for Immunology S Pineda, DG Bunis, I Kosti, M Sirota Annual Review of Biomedical Data Science 3, 2020 | 1 | 2020 |
| Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19 BL Le, G Andreoletti, T Oskotsky, A Vallejo-Gracia, R Rosales, ... bioRxiv, 2020 | | 2020 |
Marina SirotaAssociate Professor, Bakar Computational Health Sciences Institute, UCSFVerified email at ucsf.edu
