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Idit Kosti
Idit Kosti
Sr. computational biologist @ Alkahest
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
CP Kubicek, A Herrera-Estrella, V Seidl-Seiboth, DA Martinez, ...
Genome biology 12, 1-15, 2011
7642011
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
RA Ohm, N Feau, B Henrissat, CL Schoch, BA Horwitz, KW Barry, ...
PLoS pathogens 8 (12), e1003037, 2012
6192012
RBPmap: a web server for mapping binding sites of RNA-binding proteins
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014
4942014
Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection
DA Martinez, BG Oliver, Y Gräser, JM Goldberg, W Li, NM Martinez-Rossi, ...
MBio 3 (5), 10.1128/mbio. 00259-12, 2012
2342012
Cross-tissue analysis of gene and protein expression in normal and cancer tissues
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Scientific reports 6 (1), 24799, 2016
1982016
SFmap: a web server for motif analysis and prediction of splicing factor binding sites
I Paz, M Akerman, I Dror, I Kosti, Y Mandel-Gutfreund
Nucleic acids research 38 (suppl_2), W281-W285, 2010
1122010
Characterization of Coding Synonymous and Non-Synonymous Variants in ADAMTS13 Using Ex Vivo and In Silico Approaches
NC Edwards, ZA Hing, A Perry, A Blaisdell, DB Kopelman, R Fathke, ...
Plos one 7 (6), e38864, 2012
812012
Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease
A Taubes, P Nova, KA Zalocusky, I Kosti, M Bicak, MY Zilberter, Y Hao, ...
Nature Aging 1 (10), 932-947, 2021
732021
Meta-analysis of vaginal microbiome data provides new insights into preterm birth
I Kosti, S Lyalina, KS Pollard, AJ Butte, M Sirota
Frontiers in Microbiology 11, 476, 2020
652020
Myofibril breakdown during atrophy is a delayed response requiring the transcription factor PAX4 and desmin depolymerization
A Volodin, I Kosti, AL Goldberg, S Cohen
Proceedings of the National Academy of Sciences 114 (8), E1375-E1384, 2017
642017
A diverse epigenetic landscape at human exons with implication for expression
M Singer, I Kosti, L Pachter, Y Mandel-Gutfreund
Nucleic acids research 43 (7), 3498-3508, 2015
632015
Comparative analysis of fungal protein kinases and associated domains
I Kosti, Y Mandel-Gutfreund, F Glaser, BA Horwitz
BMC genomics 11, 1-12, 2010
562010
The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability
SK Gupta, I Kosti, G Plaut, A Pivko, ID Tkacz, S Cohen-Chalamish, ...
Nucleic acids research 41 (13), 6577-6594, 2013
532013
Meta-analysis of maternal and fetal transcriptomic data elucidates the role of adaptive and innate immunity in preterm birth
B Vora, A Wang, I Kosti, H Huang, I Paranjpe, TJ Woodruff, T MacKenzie, ...
Frontiers in immunology 9, 993, 2018
422018
Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
BL Le, G Andreoletti, T Oskotsky, A Vallejo-Gracia, R Rosales, K Yu, ...
Scientific reports 11 (1), 12310, 2021
412021
ARTS, the unusual septin: structural and functional aspects
Y Mandel-Gutfreund, I Kosti, S Larisch
Walter de Gruyter 392 (8-9), 783-790, 2011
332011
Global transcriptome analysis of RNA abundance regulation by ADAR in lung adenocarcinoma
MF Sharpnack, B Chen, D Aran, I Kosti, DD Sharpnack, DP Carbone, ...
EBioMedicine 27, 167-175, 2018
262018
Decreased mortality rate among COVID-19 patients prescribed statins: data from electronic health records in the US
I Marić, T Oskotsky, I Kosti, B Le, RJ Wong, GM Shaw, M Sirota, ...
Frontiers in medicine 8, 639804, 2021
252021
Whole-tissue deconvolution and scRNAseq analysis identify altered endometrial cellular compositions and functionality associated with endometriosis
DG Bunis, W Wang, J Vallvé-Juanico, S Houshdaran, S Sen, ...
Frontiers in Immunology 12, 788315, 2022
222022
Dense phenotyping from electronic health records enables machine learning-based prediction of preterm birth
A Abraham, B Le, I Kosti, P Straub, DR Velez-Edwards, LK Davis, ...
BMC medicine 20 (1), 333, 2022
202022
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