Nir Yosef
Nir Yosef
UC Berkeley
Verified email at - Homepage
Cited by
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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
AK Shalek, R Satija, X Adiconis, RS Gertner, JT Gaublomme, ...
Nature 498 (7453), 236-240, 2013
Sodium chloride drives autoimmune disease by the induction of pathogenic TH 17 cells
M Kleinewietfeld, A Manzel, J Titze, H Kvakan, N Yosef, RA Linker, ...
Nature 496 (7446), 518-522, 2013
Science forum: the human cell atlas
A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ...
elife 6, e27041, 2017
Induction and molecular signature of pathogenic TH 17 cells
Y Lee, A Awasthi, N Yosef, FJ Quintana, S Xiao, A Peters, C Wu, ...
Nature immunology 13 (10), 991-999, 2012
Densely interconnected transcriptional circuits control cell states in human hematopoiesis
N Novershtern, A Subramanian, LN Lawton, RH Mak, WN Haining, ...
Cell 144 (2), 296-309, 2011
Induction of pathogenic TH 17 cells by inducible salt-sensing kinase SGK1
C Wu, N Yosef, T Thalhamer, C Zhu, S Xiao, Y Kishi, A Regev, ...
Nature 496 (7446), 513-517, 2013
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation
AK Shalek, R Satija, J Shuga, JJ Trombetta, D Gennert, D Lu, P Chen, ...
Nature 510 (7505), 363-369, 2014
Dynamic regulatory network controlling TH 17 cell differentiation
N Yosef, AK Shalek, JT Gaublomme, H Jin, Y Lee, A Awasthi, C Wu, ...
Nature 496 (7446), 461-468, 2013
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
K Street, D Risso, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom, ...
BMC genomics 19 (1), 1-16, 2018
The epigenetic landscape of T cell exhaustion
DR Sen, J Kaminski, RA Barnitz, M Kurachi, U Gerdemann, KB Yates, ...
Science 354 (6316), 1165-1169, 2016
Deep generative modeling for single-cell transcriptomics
R Lopez, J Regier, MB Cole, MI Jordan, N Yosef
Nature methods 15 (12), 1053-1058, 2018
Revealing the vectors of cellular identity with single-cell genomics
A Wagner, A Regev, N Yosef
Nature biotechnology 34 (11), 1145-1160, 2016
Single-cell genomics unveils critical regulators of Th17 cell pathogenicity
JT Gaublomme, N Yosef, Y Lee, RS Gertner, LV Yang, C Wu, PP Pandolfi, ...
Cell 163 (6), 1400-1412, 2015
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals
M Garber, N Yosef, A Goren, R Raychowdhury, A Thielke, M Guttman, ...
Molecular cell 47 (5), 810-822, 2012
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
O Ram, A Goren, I Amit, N Shoresh, N Yosef, J Ernst, M Kellis, M Gymrek, ...
Cell 147 (7), 1628-1639, 2011
CD5L/AIM regulates lipid biosynthesis and restrains Th17 cell pathogenicity
C Wang, N Yosef, J Gaublomme, C Wu, Y Lee, CB Clish, J Kaminski, ...
Cell 163 (6), 1413-1427, 2015
Small-molecule RORγt antagonists inhibit T helper 17 cell transcriptional network by divergent mechanisms
S Xiao, N Yosef, J Yang, Y Wang, L Zhou, C Zhu, C Wu, E Baloglu, ...
Immunity 40 (4), 477-489, 2014
Medical sequencing at the extremes of human body mass
N Ahituv, N Kavaslar, W Schackwitz, A Ustaszewska, J Martin, S Hébert, ...
The American Journal of Human Genetics 80 (4), 779-791, 2007
Impulse control: temporal dynamics in gene transcription
N Yosef, A Regev
Cell 144 (6), 886-896, 2011
The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells
M Kurachi, RA Barnitz, N Yosef, PM Odorizzi, MA DiIorio, ME Lemieux, ...
Nature immunology 15 (4), 373-383, 2014
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