עקוב אחר
Manuel Rueda
Manuel Rueda
Centro Nacional de Análisis Genómico, CNAG
כתובת אימייל מאומתת בדומיין cnag.eu
כותרת
צוטט על ידי
צוטט על ידי
שנה
Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment
I Kufareva, M Rueda, V Katritch, RC Stevens, R Abagyan
Structure 19 (8), 1108-1126, 2011
3452011
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008
M Michino, E Abola, GPCR Dock 2008 Participants, CL Brooks III, ...
Nature Reviews Drug Discovery 8 (6), 455-463, 2009
3042009
A consensus view of protein dynamics
M Rueda, C Ferrer-Costa, T Meyer, A Pérez, J Camps, A Hospital, ...
Proceedings of the National Academy of Sciences 104 (3), 796-801, 2007
2382007
Whole-genome sequencing of a healthy aging cohort
GA Erikson, DL Bodian, M Rueda, B Molparia, ER Scott, ...
Cell 165 (4), 1002-1011, 2016
2222016
Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution Part 1. Cytosine
SA Trygubenko, TV Bogdan, M Rueda, M Orozco, FJ Luque, J Šponer, ...
Physical Chemistry Chemical Physics 4 (17), 4192-4203, 2002
2182002
Recipes for the selection of experimental protein conformations for virtual screening
M Rueda, G Bottegoni, R Abagyan
Journal of chemical information and modeling 50 (1), 186-193, 2010
1912010
Thorough validation of protein normal mode analysis: a comparative study with essential dynamics
M Rueda, P Chacón, M Orozco
Structure 15 (5), 565-575, 2007
1872007
GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex
V Katritch, M Rueda, PCH Lam, M Yeager, R Abagyan
Proteins: Structure, Function, and Bioinformatics 78 (1), 197-211, 2010
1452010
The structure and dynamics of DNA in the gas phase
M Rueda, SG Kalko, FJ Luque, M Orozco
Journal of the American Chemical Society 125 (26), 8007-8014, 2003
1452003
MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories
T Meyer, M D'Abramo, M Rueda, C Ferrer-Costa, A Pérez, O Carrillo, ...
Structure 18 (11), 1399-1409, 2010
1352010
Consistent improvement of cross-docking results using binding site ensembles generated with elastic network normal modes
M Rueda, G Bottegoni, R Abagyan
Journal of chemical information and modeling 49 (3), 716-725, 2009
1322009
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
1302021
Essential dynamics: a tool for efficient trajectory compression and management
T Meyer, C Ferrer-Costa, A Pérez, M Rueda, A Bidon-Chanal, FJ Luque, ...
Journal of Chemical Theory and Computation 2 (2), 251-258, 2006
1242006
Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?
M Rueda, E Cubero, CA Laughton, M Orozco
Biophysical journal 87 (2), 800-811, 2004
1162004
FlexServ: an integrated tool for the analysis of protein flexibility
J Camps, O Carrillo, A Emperador, L Orellana, A Hospital, M Rueda, ...
Bioinformatics 25 (13), 1709-1710, 2009
1022009
G-quadruplexes can maintain their structure in the gas phase
M Rueda, FJ Luque, M Orozco
Journal of the American Chemical Society 128 (11), 3608-3619, 2006
1002006
Systematic exploitation of multiple receptor conformations for virtual ligand screening
G Bottegoni, W Rocchia, M Rueda, R Abagyan, A Cavalli
PloS one 6 (5), e18845, 2011
962011
Approaching elastic network models to molecular dynamics flexibility
L Orellana, M Rueda, C Ferrer-Costa, JR Lopez-Blanco, P Chacón, ...
Journal of Chemical Theory and Computation 6 (9), 2910-2923, 2010
772010
Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases
EL Salfati, EG Spencer, SE Topol, ED Muse, M Rueda, JR Lucas, ...
Genome medicine 11, 1-8, 2019
722019
The European genome-phenome archive in 2021
MA Freeberg, LA Fromont, T D’Altri, AF Romero, JI Ciges, A Jene, G Kerry, ...
Nucleic Acids Research 50 (D1), D980-D987, 2022
702022
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מאמרים 1–20