Shiri Freilich
Title
Cited by
Cited by
Year
Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
The ISME journal 10 (11), 2557-2568, 2016
4412016
Competitive and cooperative metabolic interactions in bacterial communities
S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ...
Nature communications 2 (1), 1-7, 2011
3712011
Construction, visualisation, and clustering of transcription networks from microarray expression data
TC Freeman, L Goldovsky, M Brosch, S Van Dongen, P Mazière, ...
PLoS computational biology 3 (10), e206, 2007
2782007
The large-scale organization of the bacterial network of ecological co-occurrence interactions
S Freilich, A Kreimer, I Meilijson, U Gophna, R Sharan, E Ruppin
Nucleic acids research 38 (12), 3857-3868, 2010
2062010
The COP9 signalosome is essential for development of Drosophila melanogaster
S Freilich, E Oron, Y Kapp, Y Nevo-Caspi, S Orgad, D Segal, ...
Current Biology 9 (20), 1187-S4, 1999
1901999
Emergence, development and diversification of the TGF-β signalling pathway within the animal kingdom
L Huminiecki, L Goldovsky, S Freilich, A Moustakas, C Ouzounis, ...
BMC evolutionary biology 9 (1), 1-17, 2009
1542009
Association between translation efficiency and horizontal gene transfer within microbial communities
T Tuller, Y Girshovich, Y Sella, A Kreimer, S Freilich, M Kupiec, U Gophna, ...
Nucleic acids research 39 (11), 4743-4755, 2011
922011
The biosynthetic pathway of the nonsugar, high-intensity sweetener mogroside V from Siraitia grosvenorii
M Itkin, R Davidovich-Rikanati, S Cohen, V Portnoy, A Doron-Faigenboim, ...
Proceedings of the National Academy of Sciences 113 (47), E7619-E7628, 2016
902016
Metabolic-network-driven analysis of bacterial ecological strategies
S Freilich, A Kreimer, E Borenstein, N Yosef, R Sharan, U Gophna, ...
Genome biology 10 (6), 1-8, 2009
892009
Prospects for biological soilborne disease control: application of indigenous versus synthetic microbiomes
M Mazzola, S Freilich
Phytopathology 107 (3), 256-263, 2017
742017
Modeling microbial communities from atrazine contaminated soils promotes the development of biostimulation solutions
X Xu, R Zarecki, S Medina, S Ofaim, X Liu, C Chen, S Hu, D Brom, D Gat, ...
The ISME journal 13 (2), 494-508, 2019
582019
NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation
R Levy, R Carr, A Kreimer, S Freilich, E Borenstein
BMC bioinformatics 16 (1), 1-6, 2015
582015
The complement of enzymatic sets in different species
S Freilich, RV Spriggs, RA George, B Al-Lazikani, M Swindells, ...
Journal of molecular biology 349 (4), 745-763, 2005
482005
Variations in the identity and complexity of endosymbiont combinations in whitefly hosts
E Zchori-Fein, T Lahav, S Freilich
Frontiers in microbiology 5, 310, 2014
462014
Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins
S Freilich, T Massingham, S Bhattacharyya, H Ponstingl, PA Lyons, ...
Genome biology 6 (7), 1-9, 2005
422005
Isaac Newton Institute Fellows, Soyer OS. 2016. Challenges in microbial ecology: building predictive understanding of community function and dynamics
S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ...
ISME J 10 (11), 2557-2568, 0
40
Analysis of microbial functions in the rhizosphere using a metabolic-network based framework for metagenomics interpretation
S Ofaim, M Ofek-Lalzar, N Sela, J Jinag, Y Kashi, D Minz, S Freilich
Frontiers in Microbiology 8, 1606, 2017
392017
NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species
A Kreimer, A Doron-Faigenboim, E Borenstein, S Freilich
Bioinformatics 28 (16), 2195-2197, 2012
342012
Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits
S Freilich, S Lev, I Gonda, E Reuveni, V Portnoy, E Oren, M Lohse, ...
BMC plant biology 15 (1), 1-16, 2015
332015
Decoupling environment-dependent and independent genetic robustness across bacterial species
S Freilich, A Kreimer, E Borenstein, U Gophna, R Sharan, E Ruppin
PLoS computational biology 6 (2), e1000690, 2010
332010
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Articles 1–20