Kanika Arora
Kanika Arora
Sr Computational Biologist II, MSKCC
Verified email at mskcc.org
Title
Cited by
Cited by
Year
Organoid profiling identifies common responders to chemotherapy in pancreatic cancer
H Tiriac, P Belleau, DD Engle, D Plenker, A Deschênes, TDD Somerville, ...
Cancer discovery 8 (9), 1112-1129, 2018
1942018
Immunogenic neoantigens derived from gene fusions stimulate T cell responses
W Yang, KW Lee, RM Srivastava, F Kuo, C Krishna, D Chowell, ...
Nature medicine 25 (5), 767-775, 2019
722019
Genetic determinants of cisplatin resistance in patients with advanced germ cell tumors
A Bagrodia, BH Lee, W Lee, EK Cha, JP Sfakianos, G Iyer, EJ Pietzak, ...
Journal of Clinical Oncology 34 (33), 4000, 2016
702016
Indel variant analysis of short-read sequencing data with Scalpel
H Fang, EA Bergmann, K Arora, V Vacic, MC Zody, I Iossifov, JA O'Rawe, ...
Nature protocols 11 (12), 2529, 2016
552016
Gene silencing in Tribolium castaneum as a tool for the targeted identification of candidate RNAi targets in crop pests
E Knorr, E Fishilevich, L Tenbusch, MLF Frey, M Rangasamy, A Billion, ...
Scientific Reports 8 (1), 1-15, 2018
372018
PGBD5 promotes site-specific oncogenic mutations in human tumors
AG Henssen, R Koche, J Zhuang, E Jiang, C Reed, A Eisenberg, E Still, ...
Nature genetics 49 (7), 1005, 2017
342017
Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma
KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ...
Neurology Genetics 3 (4), 2017
302017
Genome-wide somatic variant calling using localized colored de Bruijn graphs
G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ...
Communications biology 1 (1), 1-9, 2018
292018
Conpair: concordance and contamination estimator for matched tumor–normal pairs
EA Bergmann, BJ Chen, K Arora, V Vacic, MC Zody
Bioinformatics 32 (20), 3196-3198, 2016
292016
Use of chromatin remodeling ATPases as RNAi targets for parental control of western corn rootworm (Diabrotica virgifera virgifera) and Neotropical brown stink bug (Euschistus …
E Fishilevich, AM Vélez, C Khajuria, MLF Frey, RL Hamm, H Wang, ...
Insect biochemistry and molecular biology 71, 58-71, 2016
212016
Integrative genetic analysis of mouse and human AML identifies cooperating disease alleles
MA Hatlen, K Arora, V Vacic, EA Grabowska, W Liao, B Riley-Gillis, ...
Journal of Experimental Medicine 213 (1), 25-34, 2016
202016
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
NA McNeer, J Philip, H Geiger, RE Ries, VP Lavallée, M Walsh, M Shah, ...
Leukemia 33 (8), 1934-1943, 2019
72019
Analytical validation of clinical whole-genome and transcriptome sequencing of patient-derived tumors for reporting targetable variants in cancer
KO Wrzeszczynski, V Felice, A Abhyankar, L Kozon, H Geiger, D Manaa, ...
The Journal of Molecular Diagnostics 20 (6), 822-835, 2018
62018
Patterns of gene expression in Western Corn Rootworm (Diabrotica virgifera virgifera) Neonates, challenged with Cry34Ab1, Cry35Ab1 and Cry34/35Ab1, based on next-generation …
H Wang, S Eyun, K Arora, SY Tan, P Gandra, E Moriyama, C Khajuria, ...
Toxins 9 (4), 124, 2017
62017
Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms
K Arora, M Shah, M Johnson, R Sanghvi, J Shelton, K Nagulapalli, ...
Scientific reports 9 (1), 1-13, 2019
22019
Identification of targetable BRAF ΔN486_P490 variant by whole-genome sequencing leading to dabrafenib-induced remission of a BRAF-mutant pancreatic adenocarcinoma
KO Wrzeszczynski, S Rahman, MO Frank, K Arora, M Shah, H Geiger, ...
Molecular Case Studies 5 (6), a004424, 2019
22019
Deep sequencing of 3 cancer cell lines on 2 sequencing platforms
K Arora, M Shah, M Johnson, R Sanghvi, J Shelton, K Nagulapalli, ...
bioRxiv, 623702, 2019
22019
Parental RNAi suppression of chromatin remodeling genes to control coleopteran pests
BD Siegfried, KE Narva, K Arora, SE Worden, C Khajuria, E Fishilevich, ...
US Patent 9,994,844, 2018
22018
Parental RNAI suppression of hunchback gene to control hemipteran pests
BD Siegfried, KE Narva, K Arora, SE Worden, C Khajuria, E Fishilevich, ...
US Patent 10,047,360, 2018
12018
Parental rnai suppression of kruppel gene to control coleopteran pests
BD Siegfried, KE Narva, K Arora, SE Worden, C Khajuria, E Fishilevich, ...
US Patent App. 14/971,479, 2016
12016
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