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Samantha Zarate
Samantha Zarate
Regeneron Genetics Center
Verified email at alumni.stanford.edu
Title
Cited by
Cited by
Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
16992022
A complete reference genome improves analysis of human genetic variation
S Aganezov*, SM Yan*, DC Soto*, M Kirsche*, S Zarate*, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
1832022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
1092022
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
Nature 621 (7978), 344-354, 2023
902023
Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space
MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ...
Cell Genomics 2 (1), 2022
842022
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
572020
Parliament2: Accurate structural variant calling at scale
S Zarate, A Carroll, M Mahmoud, O Krasheninina, G Jun, WJ Salerno, ...
GigaScience 9 (12), giaa145, 2020
512020
Parliament2: Fast Structural Variant Calling Using Optimized Combinations of Callers
S Zarate, A Carroll, O Krasheninina, FJ Sedlazeck, G Jun, W Salerno, ...
bioRxiv, 424267, 2018
232018
Hidden biases in germline structural variant detection
MM Khayat, SME Sahraeian, S Zarate, A Carroll, H Hong, B Pan, L Shi, ...
Genome biology 22, 1-15, 2021
202021
Multiethnic catalog of structural variants and their translational impact for disease phenotypes across 19,652 genomes
FJ Sedlazeck, B Yu, AJ Mansfield, H Chen, O Krasheninina, A Tin, Q Qi, ...
bioRxiv, 2020.05. 02.074096, 2020
62020
A complete human reference genome improves variant calling for population and clinical genomics
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
bioRxiv (to appear), 2021
42021
Concerning the eXclusion in human genomics: the choice of sex chromosome representation in the human genome drastically affects the number of identified variants
BJ Pinto, B O’Connor, MC Schatz, S Zarate, MA Wilson
G3: Genes, Genomes, Genetics 13 (10), jkad169, 2023
32023
Parliament2: Fast structural variant calling using optimized combinations of callers. BioRxiv, 424267
S Zarate, A Carroll, O Krashenina, FJ Sedlazeck, G Jun, W Salerno, ...
32018
The human reference genome is finally complete
DC Soto, M Kirsche, SM Yan, S Zarate
TheScienceBreaker 9 (3), 2023
2023
Genomic variant calling at scale across human populations
SL Zarate
Johns Hopkins University, 2023
2023
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