Alan Cleary

Cited by

	All	Since 2019
Citations	415	301
h-index	10	9
i10-index	10	9

20122013201420152016201720182019202020212022202320244 13 10 17 18 22 26 34 49 57 65 65 31

Public access

View all

12 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Jacqueline D. CampbellUSDA-ARSVerified email at usda.gov
Steven CannonUSDA-ARSVerified email at ars.usda.gov
Sudhansu DashIowa State UniversityVerified email at iastate.edu
Andrew WilkeyVerified email at iastate.edu
Joann MudgeSenior Research Scientist, National Center for Genome Resources (NCGR), Santa Fe, NMVerified email at ncgr.org
Alex G RiceRiceGeoVerified email at ricegeo.dev
Brendan MumeyProfessor of Computer Science, Montana State UniversityVerified email at montana.edu
Thiruvarangan Ramaraj, PhDAssistant Professor, School of Computing, College of Computing and Digital Media, DePaul UniversityVerified email at depaul.edu
Indika KahandaUniversity of North FloridaVerified email at unf.edu
Jugpreet SinghDirector of Bioinformatics, Leafworks Inc.Verified email at leafworks.com
Christopher TownProfessor, J. Craig Venter InstituteVerified email at jcvi.org
Brandon ShirleyUtah State UniversityVerified email at aggiemail.usu.edu
Christian HammerProfessor of Computer Science at University of PassauVerified email at uni-passau.de
Nicholas ProvartProfessor and Departmental Chair, Cell & Systems Biology, University of TorontoVerified email at utoronto.ca
Asher PashaBioinformatician, University of TorontoVerified email at utoronto.ca
Jeremy NelsonSoftware Engineer, Stanford University LibrariesVerified email at stanford.edu
David Fernández-BacaProfessor of Computer Science, Iowa State UniversityVerified email at iastate.edu
Eric LyonsProfessor. BIO5 Institute, Genetics, Plant Sciences, Biosystems Engineering, College of AgVerified email at arizona.edu
Vivek KrishnakumarIllumina Inc.Verified email at illumina.com

Alan Cleary

National Center for Genome Resources

Verified email at ncgr.org - Homepage

Computer Science Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Legume information system (LegumeInfo. org): a key component of a set of federated data resources for the legume family S Dash, JD Campbell, EKS Cannon, AM Cleary, W Huang, SR Kalberer, ... Nucleic acids research 44 (D1), D1181-D1188, 2016	158	2016
Information flow analysis for javascript S Just, A Cleary, B Shirley, C Hammer Proceedings of the 1st ACM SIGPLAN international workshop on Programming …, 2011	81	2011
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny A Cleary, A Farmer Bioinformatics 34 (9), 1562-1564, 2018	35	2018
The future of legume genetic data resources: Challenges, opportunities, and priorities GJ Bauchet, KE Bett, CT Cameron, JD Campbell, EKS Cannon, ... Legume Science 1 (1), e16, 2019	32	2019
The future of legume genetic data resources: Challenges, opportunities, and priorities GJ Bauchet, KE Bett, CT Cameron, JD Campbell, EKS Cannon, ... Legume Science 1 (1), e16, 2019	32	2019
Araport lives: an updated framework for Arabidopsis bioinformatics A Pasha, S Subramaniam, A Cleary, X Chen, T Berardini, A Farmer, ... Plant Cell 32 (9), 2683-2686, 2020	27	2020
Pangenome-Wide Association Studies with Frequented Regions B Manuweera, J Mudge, I Kahanda, B Mumey, T Ramaraj, A Cleary Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019	16	2019
The legume information system and associated online genomic resources J Berendzen, AV Brown, CT Cameron, JD Campbell, AM Cleary, S Dash, ... Legume Science 3 (3), e74, 2021	15	2021
A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019	15	2019
Exploring frequented regions in pan-genomic graphs A Cleary, T Ramaraj, I Kahanda, J Mudge, B Mumey IEEE/ACM transactions on computational biology and bioinformatics, 2018	12	2018
Reactive game engine programming for stem outreach A Cleary, L Vandenbergh, J Peterson Proceedings of the 46th ACM Technical Symposium on Computer Science …, 2015	12	2015
Doing genetic and genomic biology using the legume information system and associated resources S Redsun, S Hokin, CT Cameron, AM Cleary, J Berendzen, S Dash, ... Plant Bioinformatics: Methods and Protocols, 81-100, 2022	4	2022
Genome Context Viewer (GCV) version 2: enhanced visual exploration of multiple annotated genomes AM Cleary, AD Farmer Nucleic Acids Research 51 (W1), W225-W231, 2023	2	2023
Approximate frequent subpath mining applied to pangenomics A Cleary, B Mumey, T Ramaraj, J Mudge Proc. Int. Conf. Bioinf. Comput. Biol, 59-65, 2017	2	2017
Ten simple rules for developing visualization tools in genomics E Durant, M Rouard, EW Ganko, C Muller, AM Cleary, AD Farmer, ... PLOS Computational Biology 18 (11), e1010622, 2022	1	2022
Disease association with frequented regions of genotype graphs S Hokin, A Cleary, J Mudge medRxiv, 2020.09. 25.20201640, 2020	1	2020
Computational Pan-Genomics: Algorithms and Applications AM Cleary Montana State University, 2018	1	2018
FRBRizing an E-Library: Migrating from Dublin Core to FRBR and MODS J Nelson, A Cleary Code4Lib Journal, 2010	1	2010
Genotype-to-Phenotype Associations with Frequented Region Variants I Kahanda, B Manuweera, B Mumey, T Ramaraj, A Cleary, J Mudge 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023		2023
Graph-Based Machine Learning Approaches for Pangenomics I Kahanda, J Mudge, B Manuweera, T Ramaraj, A Cleary, B Mumey Machine Learning Methods for Multi-Omics Data Integration, 117-132, 2023		2023

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors