Pere Puigb˛
Pere Puigb˛
Department of Biology, University of Turku, Finland
Verified email at - Homepage
Cited by
Cited by
OPTIMIZER: a web server for optimizing the codon usage of DNA sequences
P Puigbo, E Guzman, A Romeu, S Garcia-Vallve
Nucleic acids research 35 (suppl_2), W126-W131, 2007
CAIcal: a combined set of tools to assess codon usage adaptation
P Puigb˛, IG Bravo, S Garcia-Vallve
Biology direct 3 (1), 1-8, 2008
Search for a ‘Tree of Life’in the thicket of the phylogenetic forest
P Puigb˛, YI Wolf, EV Koonin
Journal of biology 8, 59, 2009
Phylogenomics of prokaryotic ribosomal proteins
N Yutin, P Puigb˛, EV Koonin, YI Wolf
PLoS One 7 (5), e36972, 2012
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation‐specific genes
MY Galperin, SL Mekhedov, P Puigbo, S Smirnov, YI Wolf, DJ Rigden
Environmental microbiology 14 (11), 2870-2890, 2012
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
P Puigb˛, AE Lobkovsky, DM Kristensen, YI Wolf, EV Koonin
BMC biology 12 (1), 1-19, 2014
E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI)
P Puigb˛, IG Bravo, S Garcia-VallvÚ
BMC bioinformatics 9 (1), 1-7, 2008
The tree and net components of prokaryote evolution
P Puigbo, YI Wolf, EV Koonin
Genome biology and evolution 2, 745-756, 2010
TOPD/FMTS: a new software to compare phylogenetic trees
P Puigb˛, S Garcia-VallvÚ, JO McInerney
Bioinformatics 23 (12), 1556-1558, 2007
Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy
SR Das, SE Hensley, A David, L Schmidt, JS Gibbs, P Puigb˛, WL Ince, ...
Proceedings of the National Academy of Sciences 108 (51), E1417-E1422, 2011
Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain
SR Das, P Puigb˛, SE Hensley, DE Hurt, JR Bennink, JW Yewdell
PLoS Pathog 6 (11), e1001211, 2010
HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection
P Puigbo, A Romeu, S Garcia-Vallve
Nucleic acids research 36 (suppl_1), D524-D527, 2007
Six-week endurance exercise alters gut metagenome that is not reflected in systemic metabolism in over-weight women
E Munukka, JP Ahtiainen, P Puigbˇ, S Jalkanen, K Pahkala, A Keskitalo, ...
Frontiers in microbiology 9, 2323, 2018
Inevitability of genetic parasites
J Iranzo, P Puigb˛, AE Lobkovsky, YI Wolf, EV Koonin
Genome biology and evolution 8 (9), 2856-2869, 2016
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134
JM Gonzßlez, J Pinhassi, B Fernßndez-Gˇmez, M Coll-Lladˇ, ...
Applied and environmental microbiology 77 (24), 8676-8686, 2011
Seeing the Tree of Life behind the phylogenetic forest
P Puigb˛, YI Wolf, EV Koonin
BMC biology 11 (1), 1-3, 2013
RCDI/eRCDI: a web-server to estimate codon usage deoptimization
P Puigb˛, L AragonŔs, S Garcia-VallvÚ
BMC research notes 3 (1), 1-4, 2010
DendroUPGMA: a dendrogram construction utility
S Garcia-VallvÚ, P Puigbo
Universitat Rovira i Virgili, 2009
The phylogenetic forest and the quest for the elusive tree of life
EV Koonin, YI Wolf, P Puigbo
Cold Spring Harbor symposia on quantitative biology 74, 205-213, 2009
Comparison of phylogenetic trees and search for a central trend in the “forest of life”
EV Koonin, P Puigbo, YI Wolf
Journal of Computational Biology 18 (7), 917-924, 2011
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