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Begüm D. Topçuoğlu
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Cited by
Year
Alterations of the human gut microbiome in multiple sclerosis
S Jangi, R Gandhi, LM Cox, N Li, F Von Glehn, R Yan, B Patel, ...
Nature communications 7 (1), 12015, 2016
11382016
Long-term forest soil warming alters microbial communities in temperate forest soils
KM DeAngelis, G Pold, BD Topçuoğlu, LTA van Diepen, RM Varney, ...
Frontiers in microbiology 6, 104, 2015
3172015
A framework for effective application of machine learning to microbiome-based classification problems
BD Topçuoğlu, NA Lesniak, MT Ruffin IV, J Wiens, PD Schloss
MBio 11 (3), 10.1128/mbio. 00434-20, 2020
1332020
Experimental investigation on the controls of clumped isotopologue and hydrogen isotope ratios in microbial methane
DS Gruen, DT Wang, M Könneke, BD Topçuoğlu, LC Stewart, ...
Geochimica et Cosmochimica Acta 237, 339-356, 2018
522018
Alterations of the human gut microbiome in multiple sclerosis. Nat Commun 7: 12015
S Jangi, R Gandhi, LM Cox, N Li, F Von Glehn, R Yan, B Patel, ...
442016
Hydrogen limitation and syntrophic growth among natural assemblages of thermophilic methanogens at deep-sea hydrothermal vents
BD Topçuoğlu, LC Stewart, HG Morrison, DA Butterfield, JA Huber, ...
Frontiers in Microbiology 7, 210174, 2016
422016
Long-term forest soil warming alters microbial communities in temperate forest soils. Front Microbiol 6: 104
KM DeAngelis, G Pold, BD Topçuoglu, LT van Diepen, RM Varney, ...
352015
Women are underrepresented and receive differential outcomes at ASM journals: a six-year retrospective analysis
AK Hagan, BD Topçuoğlu, ME Gregory, HA Barton, PD Schloss
MBio 11 (6), 10.1128/mbio. 01680-20, 2020
342020
Fecal short-chain fatty acids are not predictive of colonic tumor status and cannot be predicted based on bacterial community structure
MA Sze, BD Topçuoğlu, NA Lesniak, MT Ruffin IV, PD Schloss
MBio 10 (4), 10.1128/mbio. 01454-19, 2019
342019
mikropml: user-friendly R package for supervised machine learning pipelines
BD Topçuoğlu, Z Lapp, KL Sovacool, E Snitkin, J Wiens, PD Schloss
Journal of open source software 6 (61), 2021
292021
Growth Kinetics, Carbon Isotope Fractionation, and Gene Expression in the Hyperthermophile Methanocaldococcus jannaschii during Hydrogen-Limited Growth …
BD Topçuoğlu, C Meydan, TB Nguyen, SQ Lang, JF Holden
Applied and Environmental Microbiology 85 (9), e00180-19, 2019
272019
Alterations of the human gut microbiome in multiple sclerosis. Nat Commun. 2016; 7: 12015
S Jangi, R Gandhi, LM Cox, N Li, F Von Glehn, R Yan, B Patel, ...
Epub 2016/06/29. https://doi. org/10.1038/ncomms12015 PMID: 27352007, 0
18
A framework for effective application of machine learning to microbiome-based classification problems. mBio 11: e00434-20
BD Topçuoglu, NA Lesniak, MT Ruffin, J Wiens, PD Schloss, MJ Blaser
162020
Formate hydrogenlyase and formate secretion ameliorate H2 inhibition in the hyperthermophilic archaeon Thermococcus paralvinellae
BD Topçuoğlu, C Meydan, R Orellana, JF Holden
Environmental microbiology 20 (3), 949-957, 2018
142018
Seafloor incubation experiment with deep-sea hydrothermal vent fluid reveals effect of pressure and lag time on autotrophic microbial communities
CS Fortunato, DA Butterfield, B Larson, N Lawrence-Slavas, CK Algar, ...
Applied and Environmental Microbiology 87 (9), e00078-21, 2021
112021
A goldilocks principle for the gut microbiome: taxonomic resolution matters for microbiome-based classification of colorectal cancer
CR Armour, BD Topçuoğlu, A Garretto, PD Schloss
MBio 13 (1), e03161-21, 2022
92022
mikropml: user-friendly R package for supervised machine learning pipelines. J Open Source Softw 6: 3073
B Topçuoglu, Z Lapp, K Sovacool, E Snitkin, J Wiens, P Schloss
92021
Ten simple rules to increase computational skills among biologists with Code Clubs
AK Hagan, NA Lesniak, MJ Balunas, L Bishop, WL Close, MD Doherty, ...
PLOS Computational Biology 16 (8), e1008119, 2020
82020
Long-term forest soil warming alters microbial communities in temperate forest soils. Front Microbiol
KM DeAngelis, G Pold, BD Topcuoglu, LTA Diepen, RM Varney, ...
72015
Vaccine hyporesponse induced by individual antibiotic treatment in mice and non-human primates is diminished upon recovery of the gut microbiome
G Swaminathan, M Citron, J Xiao, JE Norton Jr, AL Reens, BD Topçuoğlu, ...
Vaccines 9 (11), 1340, 2021
62021
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Articles 1–20