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Ruping Sun
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Integrative genome analyses identify key somatic driver mutations of small-cell lung cancer
M Peifer, L Fernández-Cuesta, ML Sos, J George, D Seidel, LH Kasper, ...
Nature Genetics 44 (10), 1104-1110, 2012
14562012
Promoter of lncRNA gene PVT1 is a tumor-suppressor DNA boundary element
SW Cho, J Xu, R Sun, MR Mumbach, AC Carter, YG Chen, KE Yost, J Kim, ...
Cell 173 (6), 1398-1412. e22, 2018
4082018
Quantitative evidence for early metastatic seeding in colorectal cancer
Z Hu, J Ding, Z Ma, R Sun, JA Seoane, J Scott Shaffer, CJ Suarez, ...
Nature genetics 51 (7), 1113-1122, 2019
3552019
X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes
H Hu, SA Haas, J Chelly, H Van Esch, M Raynaud, APM de Brouwer, ...
Molecular psychiatry 21 (1), 133-148, 2016
3042016
Frequent mutations in chromatin-remodelling genes in pulmonary carcinoids
L Fernandez-Cuesta, M Peifer, X Lu, R Sun, L Ozretić, D Seidel, T Zander, ...
Nature communications 5 (1), 3518, 2014
2892014
Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors
J George, V Walter, M Peifer, LB Alexandrov, D Seidel, F Leenders, ...
Nature communications 9 (1), 1048, 2018
2842018
CD74–NRG1 Fusions in Lung Adenocarcinoma
L Fernandez-Cuesta, D Plenker, H Osada, R Sun, R Menon, F Leenders, ...
Cancer discovery 4 (4), 415-422, 2014
2772014
Between-region genetic divergence reflects the mode and tempo of tumor evolution
R Sun, Z Hu, A Sottoriva, TA Graham, A Harpak, Z Ma, JM Fischer, ...
Nature genetics 49 (7), 1015-1024, 2017
1692017
Characterizing the ecological and evolutionary dynamics of cancer
N Zahir, R Sun, D Gallahan, RA Gatenby, C Curtis
Nature genetics 52 (8), 759-767, 2020
952020
Modeling read counts for CNV detection in exome sequencing data
MI Love, A Myšičková, R Sun, V Kalscheuer, M Vingron, SA Haas
Statistical applications in genetics and molecular biology 10 (1), 2011
852011
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS
AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ...
Bioinformatics 28 (5), 619-627, 2012
772012
Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data
RS Lynnette Fernandez-Cuesta
Genome Biology 16 (1), 7, 2015
62*2015
A population genetics perspective on the determinants of intra-tumor heterogeneity
Z Hu, R Sun, C Curtis
Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1867 (2), 109-126, 2017
602017
Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours
R Sun, X Fu, Y Li, Y Xie, Y Mao
BMC genomics 10, 1-14, 2009
582009
Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy
JL Caswell-Jin, K McNamara, JG Reiter, R Sun, Z Hu, Z Ma, J Ding, ...
Nature communications 10 (1), 657, 2019
542019
Big bang tumor growth and clonal evolution
R Sun, Z Hu, C Curtis
Cold Spring Harbor perspectives in medicine 8 (5), a028381, 2018
472018
Oncogene-like addiction to aneuploidy in human cancers
V Girish, AA Lakhani, SL Thompson, CM Scaduto, LM Brown, ...
Science 381 (6660), eadg4521, 2023
452023
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads
R Sun, MI Love, T Zemojtel, AK Emde, HR Chung, M Vingron, SA Haas
Bioinformatics 28 (7), 1024-1025, 2012
352012
CD74-NRG1 fusions in lung adenocarcinoma. Cancer Discov. 2014; 4: 415–422. doi: 10.1158/2159-8290
L Fernandez-Cuesta, D Plenker, H Osada, R Sun, R Menon, F Leenders, ...
CD-13-0633.[Abstract][CrossRef][Google Scholar], 0
34
Simultaneously detection of genomic and expression alterations in prostate cancer using cDNA microarray
M Jiang, M Li, X Fu, Y Huang, H Qian, R Sun, Y Mao, Y Xie, Y Li
The Prostate 68 (14), 1496-1509, 2008
292008
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