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Sameer Varma
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Coordination numbers of alkali metal ions in aqueous solutions
S Varma, SB Rempe
Biophysical chemistry 124 (3), 192-199, 2006
3122006
Tuning ion coordination architectures to enable selective partitioning
S Varma, SB Rempe
Biophysical journal 93 (4), 1093-1099, 2007
1812007
K+/Na+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints
S Varma, D Sabo, SB Rempe
Journal of molecular biology 376 (1), 13-22, 2008
1722008
Theoretical Study of Aqueous Solvation of K+ Comparing ab Initio, Polarizable, and Fixed-Charge Models
TW Whitfield, S Varma, E Harder, G Lamoureux, SB Rempe, B Roux
Journal of Chemical Theory and Computation 3 (6), 2068-2082, 2007
1082007
Nanomechanics of type I collagen
S Varma, JPRO Orgel, JD Schieber
Biophysical journal 111 (1), 50-56, 2016
1072016
Measurement of elastic modulus of collagen type I single fiber
P Dutov, O Antipova, S Varma, JPRO Orgel, JD Schieber
PloS one 11 (1), e0145711, 2016
1042016
Ion selectivity from local configurations of ligands in solutions and ion channels
D Asthagiri, PD Dixit, S Merchant, ME Paulaitis, LR Pratt, SB Rempe, ...
Chemical physics letters 485 (1-3), 1-7, 2010
982010
Design principles for K+ selectivity in membrane transport
S Varma, DM Rogers, LR Pratt, SB Rempe
Journal of General Physiology 137 (6), 479-488, 2011
92*2011
The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF
S Varma, SW Chiu, E Jakobsson
Biophysical journal 90 (1), 112-123, 2006
832006
Structural transitions in ion coordination driven by changes in competition for ligand binding
S Varma, SB Rempe
Journal of the American Chemical Society 130 (46), 15405-15419, 2008
812008
Ionization states of residues in OmpF and mutants: effects of dielectric constant and interactions between residues
S Varma, E Jakobsson
Biophysical journal 86 (2), 690-704, 2004
692004
The exceptionally high reactivity of Cys 621 is critical for electrophilic activation of the sensory nerve ion channel TRPA1
PK Bahia, TA Parks, KR Stanford, DA Mitchell, S Varma, SM Stevens Jr, ...
Journal of General Physiology 147 (6), 451-465, 2016
682016
Multibody effects in ion binding and selectivity
S Varma, SB Rempe
Biophysical journal 99 (10), 3394-3401, 2010
562010
Studies of the thermodynamic properties of hydrogen gas in bulk water
D Sabo, S Varma, MG Martin, SB Rempe
The Journal of Physical Chemistry B 112 (3), 867-876, 2008
512008
Role of methyl-induced polarization in ion binding
M Rossi, A Tkatchenko, SB Rempe, S Varma
Proceedings of the National Academy of Sciences 110 (32), 12978-12983, 2013
492013
Case study of Rb+(aq), quasi-chemical theory of ion hydration, and the no split occupancies rule
D Sabo, D Jiao, S Varma, LR Pratt, SB Rempe
Annual Reports Section" C"(Physical Chemistry) 109, 266-278, 2013
402013
Molecular basis for higher affinity of SARS‐CoV‐2 spike RBD for human ACE2 receptor
JM Delgado, N Duro, DM Rogers, A Tkatchenko, SA Pandit, S Varma
Proteins: Structure, Function, and Bioinformatics 89 (9), 1134-1144, 2021
362021
Water dynamics at protein–protein interfaces: Molecular dynamics study of virus–host receptor complexes
P Dutta, M Botlani, S Varma
The Journal of Physical Chemistry B 118 (51), 14795-14807, 2014
262014
Ca2+ Activation of the cPLA2 C2 Domain:  Ordered Binding of Two Ca2+ Ions with Positive Cooperativity
NJ Malmberg, S Varma, E Jakobsson, JJ Falke
Biochemistry 43 (51), 16320-16328, 2004
242004
The disruption of prenylation leads to pleiotropic rearrangements in cellular behavior in Staphylococcus aureus
CN Krute, RK Carroll, FE Rivera, A Weiss, RM Young, A Shilling, ...
Molecular microbiology 95 (5), 819-832, 2015
232015
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