עקוב אחר
Simon Boothroyd
Simon Boothroyd
Psivant Therapeutics
כתובת אימייל מאומתת בדומיין psivant.com
כותרת
צוטט על ידי
צוטט על ידי
שנה
Development and benchmarking of open force field v1. 0.0—the parsley small-molecule force field
Y Qiu, DGA Smith, S Boothroyd, H Jang, DF Hahn, J Wagner, CC Bannan, ...
Journal of chemical theory and computation 17 (10), 6262-6280, 2021
1182021
Why do some molecules form hydrates or solvates?
S Boothroyd, A Kerridge, A Broo, D Buttar, J Anwar
Crystal Growth & Design 18 (3), 1903-1908, 2018
602018
Development and benchmarking of open force field 2.0. 0: the Sage small molecule force field
S Boothroyd, PK Behara, OC Madin, DF Hahn, H Jang, V Gapsys, ...
Journal of chemical theory and computation 19 (11), 3251-3275, 2023
442023
Solubility prediction from first principles: a density of states approach
S Boothroyd, A Kerridge, A Broo, D Buttar, J Anwar
Physical Chemistry Chemical Physics 20 (32), 20981-20987, 2018
332018
Open force field evaluator: An automated, efficient, and scalable framework for the estimation of physical properties from molecular simulation
S Boothroyd, LP Wang, DL Mobley, JD Chodera, MR Shirts
Journal of chemical theory and computation 18 (6), 3566-3576, 2022
262022
Open force field BespokeFit: automating bespoke torsion parametrization at scale
JT Horton, S Boothroyd, J Wagner, JA Mitchell, T Gokey, DL Dotson, ...
Journal of chemical information and modeling 62 (22), 5622-5633, 2022
202022
Improving Force Field Accuracy by Training against Condensed-Phase Mixture Properties
S Boothroyd, OC Madin, DL Mobley, LP Wang, JD Chodera, MR Shirts
Journal of chemical theory and computation 18 (6), 3577-3592, 2022
152022
Bayesian-inference-driven model parametrization and model selection for 2CLJQ fluid models
OC Madin, S Boothroyd, RA Messerly, J Fass, JD Chodera, MR Shirts
Journal of chemical information and modeling 62 (4), 874-889, 2022
132022
openforcefield/openff-forcefields: Version 2.0. 0
J Wagner, M Thompson, D Dotson, H Jang, S Boothroyd, ...
Sage, 2021
112021
Solubility prediction for a soluble organic molecule via chemical potentials from density of states
S Boothroyd, J Anwar
The Journal of Chemical Physics 151 (18), 2019
72019
A transferable double exponential potential for condensed phase simulations of small molecules
JT Horton, S Boothroyd, PK Behara, DL Mobley, DJ Cole
Digital Discovery 2 (4), 1178-1187, 2023
42023
Conceptual, self-assembling graphene nanocontainers
S Boothroyd, J Anwar
Nanoscale 7 (28), 12104-12108, 2015
32015
Tuning Potential Functions to Host–Guest Binding Data
J Setiadi, S Boothroyd, DR Slochower, DL Dotson, MW Thompson, ...
Journal of Chemical Theory and Computation 20 (1), 239-252, 2023
22023
Development and benchmarking of an open, self-consistent force field for proteins and small molecules from the open force field initiative
CE Cavender, PK Behara, S Boothroyd, DL Dotson, JT Horton, JA Mitchell, ...
Biophysical Journal 122 (3), 421a, 2023
12023
Benchmarking Quantum Mechanical Levels of Theory for Valence Parametrization in Force Fields
PK Behara, H Jang, J Horton, T Gokey, D Dotson, S Boothroyd, C Bayly, ...
2024
STORMM: Structure and TOpology Replica Molecular Mechanics for chemical simulations
DS Cerutti, S Boothroyd, R Wiewiora, W Sherman
bioRxiv, 2024.03. 27.587048, 2024
2024
Fast, conformation-independent charges with graph convolutional networks
L Wang, S Boothroyd, JT Horton, MW Thompson, MR Shirts, DJ Cole, ...
Biophysical journal 122 (3), 36a, 2023
2023
Building an open, self-consistent force field for biopolymers and small molecules with the open force field initiative infrastructure
CE Cavender, PK Behara, S Boothroyd, DL Dotson, IJ Pulido, ...
Biophysical Journal 121 (3), 272a, 2022
2022
physical_validation: A Python package to assess the physical validity of molecular simulation results
PT Merz, WT Hsu, MW Thompson, S Boothroyd, CC Walker, MR Shirts
Journal of open source software 7 (69), 2022
2022
Open Force Field Initiative: New Strategies for Parameterizing Non-Bonded Interactions
S Boothroyd, O Madin, M Shirts
2020 Virtual AIChE Annual Meeting, 2020
2020
המערכת אינה יכולה לבצע את הפעולה כעת. נסה שוב מאוחר יותר.
מאמרים 1–20