Developing a ‘personalome’for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes F Vitali, Q Li, AG Schissler, J Berghout, C Kenost, YA Lussier Briefings in bioinformatics 20 (3), 789-805, 2019 | 32 | 2019 |
Accurate genome relative abundance estimation for closely related species in a metagenomic sample MB Sohn, L An, N Pookhao, Q Li BMC bioinformatics 15, 1-13, 2014 | 29 | 2014 |
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations V Gardeux, J Berghout, I Achour, AG Schissler, Q Li, C Kenost, J Li, ... Journal of the American Medical Informatics Association 24 (6), 1116-1126, 2017 | 28 | 2017 |
N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes Q Li, AG Schissler, V Gardeux, I Achour, C Kenost, J Berghout, H Li, ... BMC Medical Genomics 10, 5-16, 2017 | 28 | 2017 |
Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival AG Schissler, V Gardeux, Q Li, I Achour, H Li, WW Piegorsch, YA Lussier Bioinformatics 31 (12), i293-i302, 2015 | 27 | 2015 |
A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes N Pookhao, MB Sohn, Q Li, I Jenkins, R Du, H Jiang, L An Bioinformatics 31 (2), 158-165, 2015 | 23 | 2015 |
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects Q Li, AG Schissler, V Gardeux, J Berghout, I Achour, C Kenost, H Li, ... Journal of biomedical informatics 66, 32-41, 2017 | 20 | 2017 |
Analysis of aggregated cell–cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells AG Schissler, Q Li, JL Chen, C Kenost, I Achour, DD Billheimer, H Li, ... Bioinformatics 32 (12), i80-i89, 2016 | 14 | 2016 |
Emergence of pathway-level composite biomarkers from converging gene set signals of heterogeneous transcriptomic responses SR Zaim, Q Li, AG Schissler, YA Lussier PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018: Proceedings of the Pacific Symposium …, 2018 | 12 | 2018 |
eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs H Li, N Pouladi, I Achour, V Gardeux, J Li, Q Li, HH Zhang, FD Martinez, ... Journal of biomedical informatics 58, 226-234, 2015 | 12 | 2015 |
Transient gene expression mediated by agroinfiltration and its application T Gang Molecular Plant Breeding, 2009 | 11 | 2009 |
Contributions from the 2018 literature on bioinformatics and translational informatics M Smaïl-Tabbone, B Rance Yearbook of Medical Informatics 28 (01), 190-193, 2019 | 10 | 2019 |
Interpretation of ‘Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes Q Li, SR Zaim, D Aberasturi, J Berghout, H Li, F Vitali, C Kenost, ... AMIA Annual Symposium Proceedings 2019, 582, 2019 | 9 | 2019 |
Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms F Vitali, J Berghout, J Fan, J Li, Q Li, H Li, YA Lussier Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 24, 308, 2019 | 8 | 2019 |
iDEG: a single-subject method utilizing local estimates of dispersion to impute differential expression between two transcriptomes Q Li, SR Zaim, D Aberasturi, J Berghout, H Li, F Vitali, C Kenost, ... bioRxiv, 405332, 2018 | 4 | 2018 |
iDEG: a singlesubject method for assessing gene differential expression from two transcriptomes of an individual Q Li, SR Zaim, D Aberasturi, J Berghout, H Li, C Kenost, HH Zhang, ... bioRxiv, 2018 | 4 | 2018 |
Single subject transcriptome analysis to identify functionally signed gene set or pathway activity J Berghout, Q Li, N Pouladi, J Li, YA Lussier PACIFIC SYMPOSIUM ON BIOCOMPUTING 2018: Proceedings of the Pacific Symposium …, 2018 | 4 | 2018 |
Accelerating precision biology and medicine with computational biology and bioinformatics YA Lussier, H Li, N Pouladi, Q Li Genome Biology 15, 1-3, 2014 | 3 | 2014 |
Modulation of the proliferation of mouse spleen lymphocytes by 3, 19-ketal andrographolide derivatives G Dai, H Xu, J Wang CHINESE NEW DRUGS JOURNAL 16 (5), 378, 2007 | 3 | 2007 |
Cloning and phylogenetic analysis of the CP gene of potato virus Y in Guizhou Q Youbin, T Gang, L Qike Molecular Plant Breeding, 2009 | 1 | 2009 |