The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ... Nucleic acids research 50 (W1), 2022 | 3708* | 2022 |
Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018 | 515 | 2018 |
A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 315* | 2020 |
A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 275 | 2023 |
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016 | 240 | 2016 |
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139-162, 2020 | 175 | 2020 |
Chromosome-scale, haplotype-resolved assembly of human genomes S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ... Nature biotechnology 39 (3), 309-312, 2021 | 152* | 2021 |
Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 96 | 2022 |
Dense and accurate whole-chromosome haplotyping of individual genomes D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ... Nature communications 8 (1), 1293, 2017 | 87 | 2017 |
A graph-based approach to diploid genome assembly S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall Bioinformatics 34 (13), i105-i114, 2018 | 68 | 2018 |
Computational methods for chromosome-scale haplotype reconstruction S Garg Genome biology 22 (1), 101, 2021 | 62 | 2021 |
A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 57 | 2020 |
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ... Nucleic acids research 48 (9), 5183-5195, 2020 | 52 | 2020 |
Read-based phasing of related individuals S Garg, M Martin, T Marschall Bioinformatics 32 (12), i234-i242, 2016 | 44 | 2016 |
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church Bioinformatics 36 (8), 2385-2392, 2020 | 27 | 2020 |
O Fischer M Martin, M Patterson, S Garg S., Pisanti, N., Klau, GW, Schöenhuth, A., & Marschall, 2016 | 27 | 2016 |
VividhaVahana: smartphone based vehicle classification and its applications in developing region S Garg, P Singh, P Ramanathan, R Sen Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014 | 27 | 2014 |
Somatic structural variant formation is guided by and influences genome architecture N Sidiropoulos, BR Mardin, FG Rodríguez-González, ID Bochkov, S Garg, ... Genome research 32 (4), 643-655, 2022 | 16 | 2022 |
SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing D Heller, M Vingron, G Church, H Li, S Garg BioRxiv, 2020.02. 25.964445, 2020 | 15 | 2020 |
A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019 | 15 | 2019 |