עקוב אחר
Shilpa Garg
Shilpa Garg
כתובת אימייל מאומתת בדומיין biosustain.dtu.dk
כותרת
צוטט על ידי
צוטט על ידי
שנה
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
E Afgan, A Nekrutenko, BA Grüning, D Blankenberg, J Goecks, ...
Nucleic acids research 50 (W1), 2022
3708*2022
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
5152018
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
315*2020
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
2752023
WhatsHap: fast and accurate read-based phasing
M Martin, M Patterson, S Garg, S O Fischer, N Pisanti, GW Klau, ...
BioRxiv, 085050, 2016
2402016
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139-162, 2020
1752020
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
152*2021
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
962022
Dense and accurate whole-chromosome haplotyping of individual genomes
D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ...
Nature communications 8 (1), 1293, 2017
872017
A graph-based approach to diploid genome assembly
S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall
Bioinformatics 34 (13), i105-i114, 2018
682018
Computational methods for chromosome-scale haplotype reconstruction
S Garg
Genome biology 22 (1), 101, 2021
622021
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
572020
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ...
Nucleic acids research 48 (9), 5183-5195, 2020
522020
Read-based phasing of related individuals
S Garg, M Martin, T Marschall
Bioinformatics 32 (12), i234-i242, 2016
442016
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph
S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church
Bioinformatics 36 (8), 2385-2392, 2020
272020
O Fischer
M Martin, M Patterson, S Garg
S., Pisanti, N., Klau, GW, Schöenhuth, A., & Marschall, 2016
272016
VividhaVahana: smartphone based vehicle classification and its applications in developing region
S Garg, P Singh, P Ramanathan, R Sen
Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014
272014
Somatic structural variant formation is guided by and influences genome architecture
N Sidiropoulos, BR Mardin, FG Rodríguez-González, ID Bochkov, S Garg, ...
Genome research 32 (4), 643-655, 2022
162022
SDip: A novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing
D Heller, M Vingron, G Church, H Li, S Garg
BioRxiv, 2020.02. 25.964445, 2020
152020
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
152019
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מאמרים 1–20