Roger P. Alexander
Roger P. Alexander
Senior Staff Scientist, Pacific Northwest Diabetes Research Institute
Verified email at yale.edu - Homepage
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
EP Consortium
Nature 489 (7414), 57-74, 2012
10504*2012
Architecture of the human regulatory network derived from ENCODE data
MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ...
Nature 489 (7414), 91-100, 2012
12832012
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ...
Science 330 (6012), 1775-1787, 2010
9012010
Annotating non-coding regions of the genome
RP Alexander, G Fang, J Rozowsky, M Snyder, MB Gerstein
Nature Reviews Genetics 11 (8), 559-571, 2010
3672010
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2292014
Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors
RP Alexander, IB Zhulin
Proceedings of the National Academy of Sciences 104 (8), 2885-2890, 2007
2242007
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
C Cheng, R Alexander, R Min, J Leng, KY Yip, J Rozowsky, KK Yan, ...
Genome research 22 (9), 1658-1667, 2012
1672012
RodZ, a component of the bacterial core morphogenic apparatus
SA Alyahya, R Alexander, T Costa, AO Henriques, T Emonet, ...
Proceedings of the National Academy of Sciences 106 (4), 1239-1244, 2009
1492009
Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data
KY Yip, RP Alexander, KK Yan, M Gerstein
PloS one 5 (1), e8121, 2010
1272010
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets
C Cheng, KK Yan, KY Yip, J Rozowsky, R Alexander, C Shou, M Gerstein
Genome biology 12 (2), R15, 2011
1222011
Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis
K Wuichet, RP Alexander, IB Zhulin
Methods in enzymology 422, 3-31, 2007
1152007
Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks
KK Yan, G Fang, N Bhardwaj, RP Alexander, M Gerstein
Proceedings of the National Academy of Sciences 107 (20), 9186-9191, 2010
922010
Understanding modularity in molecular networks requires dynamics
RP Alexander, PM Kim, T Emonet, MB Gerstein
Sci. Signal. 2 (81), pe44-pe44, 2009
902009
CheV: CheW-like coupling proteins at the core of the chemotaxis signaling network
RP Alexander, AC Lowenthal, RM Harshey, KM Ottemann
Trends in microbiology 18 (11), 494-503, 2010
612010
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies
SL Subramanian, RR Kitchen, R Alexander, BS Carter, KH Cheung, ...
Journal of extracellular vesicles 4 (1), 27497, 2015
362015
Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis
F Qian, L Chung, W Zheng, V Bruno, RP Alexander, Z Wang, X Wang, ...
Viruses 5 (7), 1664-1681, 2013
252013
Extending gene ontology in the context of extracellular RNA and vesicle communication
KH Cheung, S Keerthikumar, P Roncaglia, SL Subramanian, ME Roth, ...
Journal of biomedical semantics 7 (1), 19, 2016
212016
Overview of Protocols for Studying Extracellular RNA and Extracellular Vesicles
J Small, R Alexander, L Balaj
Extracellular RNA, 17-21, 2018
32018
Evolutionary genomics of methyl-accepting chemotaxis proteins
RP Alexander
Georgia Institute of Technology, 2007
22007
Section I-Computational Analyses of Sequences and Sequence Alignments-1 Comparative Genomic and Protein Sequence Analyses of a Complex System Controlling Bacterial Chemotaxis
K Wuichet, RP Alexander, IB Zhulin
Methods in Enzymology 422, 3-31, 2007
2007
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