| mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription K Brannan, H Kim, B Erickson, K Glover-Cutter, S Kim, N Fong, L Kiemele, ... Molecular cell 46 (3), 311-324, 2012 | 226 | 2012 |
| Effects of transcription elongation rate and Xrn2 exonuclease activity on RNA polymerase II termination suggest widespread kinetic competition N Fong, K Brannan, B Erickson, H Kim, MA Cortazar, RM Sheridan, ... Molecular cell 60 (2), 256-267, 2015 | 223 | 2015 |
| SONAR discovers RNA-binding proteins from analysis of large-scale protein-protein interactomes KW Brannan, W Jin, SC Huelga, CAS Banks, JM Gilmore, L Florens, ... Molecular cell 64 (2), 282-293, 2016 | 168 | 2016 |
| Control of RNA Pol II speed by PNUTS-PP1 and Spt5 dephosphorylation facilitates termination by a “sitting duck torpedo” mechanism MA Cortazar, RM Sheridan, B Erickson, N Fong, K Glover-Cutter, ... Molecular cell 76 (6), 896-908. e4, 2019 | 163 | 2019 |
| Robust single-cell discovery of RNA targets of RNA-binding proteins and ribosomes KW Brannan, IA Chaim, RJ Marina, BA Yee, ER Kofman, DA Lorenz, ... Nature methods 18 (5), 507-519, 2021 | 85 | 2021 |
| Evaluation of engineered CRISPR-Cas-mediated systems for site-specific RNA editing RJ Marina, KW Brannan, KD Dong, BA Yee, GW Yeo Cell reports 33 (5), 2020 | 29 | 2020 |
| Directed editing of cellular RNA via nuclear delivery of CRISPR/CAS9 E Yeo, K Brannan, R Marina, D Nelles US Patent 11,453,891, 2022 | 21 | 2022 |
| A relay velocity model infers cell-dependent RNA velocity S Li, P Zhang, W Chen, L Ye, KW Brannan, NT Le, J Abe, JP Cooke, ... Nature biotechnology 42 (1), 99-108, 2024 | 18 | 2024 |
| Control of transcriptional elongation by RNA polymerase II: a retrospective K Brannan, DL Bentley Genetics research international 2012, 2012 | 16 | 2012 |
| HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence W Jin, KW Brannan, K Kapeli, SS Park, HQ Tan, ML Gosztyla, ... Molecular Cell 83 (14), 2595-2611. e11, 2023 | 5 | 2023 |
| Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions JS Xiang, JR Mueller, EC Luo, BA Yee, D Schafer, JC Schmok, FE Tan, ... Research Square, 2022 | 5 | 2022 |
| Large-scale map of RNA binding protein interactomes across the mRNA life-cycle L Street, K Rothamel, K Brannan, W Jin, B Bokor, K Dong, K Rhine, ... bioRxiv, 2023 | 2 | 2023 |
| Directed pseudouridylation of rna E Yeo, K Brannan US Patent App. 17/272,018, 2021 | 2 | 2021 |
| Directed modification of rna E Yeo, K Brannan US Patent App. 17/272,009, 2021 | 2 | 2021 |
| Discovery and functional interrogation of the virus and host RNA interactome of SARS-Cov-2 proteins JS Xiang, JR Mueller, EC Luo, B Yee, D Schafer, JC Schmok, FE Tan, ... | 2 | 2021 |
| A relay velocity model infers cell-dependent RNA velocity KW Brannan, NT Le, J Abe, JP Cooke, G Wang Nature biotechnology 42, 99-108, 2024 | 1 | 2024 |
| Methods and use of chimeric proteins E Yeo, KW Brannan, R Marina, IA Chaim, DA Lorenz US Patent App. 17/910,967, 2023 | | 2023 |
| Directed editing of cellular rna via nuclear delivery of crispr/cas9 E Yeo, K Brannan, R Marina, D Nelles US Patent App. 17/811,626, 2023 | | 2023 |
| Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions (preprint) JS Xiang, JR Mueller, EC Luo, BA Yee, D Schafer, JC Schmok, FE Tan, ... | | 2022 |
| Discovery and Functional Interrogation of the Virus and Host RNA Interactome of SARS-Cov-2 Proteins (preprint) JS Xiang, JR Mueller, EC Luo, B Yee, D Schafer, JC Schmok, FE Tan, ... | | 2021 |
