Tommy Kaplan

Cited by

	All	Since 2015
Citations	4344	2155
h-index	27	24
i10-index	34	30

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2004200520062007200820092010201120122013201420152016201720182019202021 41 90 142 134 179 245 276 316 352 340 361 291 310 324 376 492

Co-authors

Nir FriedmanProfessor of Computer Science and Life Sciences, Hebrew UniversityVerified email at mail.huji.ac.il
Michael B. EisenInvestigator, HHMI and Associate Professor of Molecular and Cell Biology, UC BerkeleyVerified email at berkeley.edu
Oliver RandoProfessor of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical SchoolVerified email at umassmed.edu
Hanah MargalitThe Hebrew University of JerusalemVerified email at ekmd.huji.ac.il
Minkyu KimUniversity of California, San FranciscoVerified email at ucsf.edu
Len A. PennacchioSenior Staff Scientist, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Axel ViselLawrence Berkeley National LaboratoryVerified email at lbl.gov
Dalit MayMD/PhD, Family Physician, Clalit Health ServicesVerified email at clalit.org.il
Matthew BlowResearch scientist, Joint Genome InstituteVerified email at lbl.gov
Edward M RubinScience CorpsVerified email at science-corps.org
Naomi HabibHebrew University of Jerusalem IsraelVerified email at elsc.huji.ac.il
Gal ElidanHebrew University / GoogleVerified email at huji.ac.il
Yoseph BarashAssociate Professor of Genetics and Computer & Information Science, University of PennsylvaniaVerified email at upenn.edu
Moran YassourThe Hebrew University of JerusalemVerified email at mail.huji.ac.il
michal schwartzprofessorVerified email at weizmann.ac.il
Michael F DionHarvard UniversityVerified email at cgr.harvard.edu
Mark D. BigginStaff Scientist, Genomics Division, Lawrence Berkeley National LaboratoryVerified email at lbl.gov
Joshua MossMD-PhD candidate, Hebrew Unviersity of JerusalemVerified email at mail.huji.ac.il
Yuval DorProfessor of Biology, Hebrew University of JerusalemVerified email at ekmd.huji.ac.il
Benjamin GlaserHadassah-Hebrew University Medical CenterVerified email at mail.huji.ac.il

Tommy Kaplan

Professor of Computer Science and Computational Biology, The Hebrew University

Verified email at cs.huji.ac.il - Homepage

Computational Biology cfDNA methylation Machine Learning Enhancers


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Single-nucleosome mapping of histone modifications in S. cerevisiae CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, ... PLoS biology 3 (10), e328, 2005	584	2005
Dynamics of replication-independent histone turnover in budding yeast MF Dion, T Kaplan, M Kim, S Buratowski, N Friedman, OJ Rando Science 315 (5817), 1405, 2007	574	2007
Modeling dependencies in protein-DNA binding sites Y Barash, G Elidan, N Friedman, T Kaplan Proceedings of the seventh annual international conference on Research in …, 2003	296	2003
Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition MM Harrison, XY Li, T Kaplan, MR Botchan, MB Eisen PLoS Genet 7 (10), e1002266, 2011	264	2011
Large-scale discovery of enhancers from human heart tissue D May, MJ Blow, T Kaplan, DJ McCulley, BC Jensen, JA Akiyama, A Holt, ... Nature genetics 44 (1), 89, 2012	238	2012
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing M Yassour, T Kaplan, HB Fraser, JZ Levin, J Pfiffner, X Adiconis, ... Proceedings of the National Academy of Sciences 106 (9), 3264-3269, 2009	238	2009
Structure and function of a transcriptional network activated by the MAPK Hog1 AP Capaldi, T Kaplan, Y Liu, N Habib, A Regev, N Friedman, EK O'Shea Nature genetics 40 (11), 1300, 2008	221	2008
A high-resolution enhancer atlas of the developing telencephalon A Visel, L Taher, H Girgis, D May, O Golonzhka, RV Hoch, GL McKinsey, ... Cell 152 (4), 895-908, 2013	202	2013
Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development T Kaplan, XY Li, PJ Sabo, S Thomas, JA Stamatoyannopoulos, MD Biggin, ... PLoS Genet 7 (2), e1001290, 2011	196	2011
Cell cycle–and chaperone-mediated regulation of H3K56ac incorporation in yeast T Kaplan, CL Liu, JA Erkmann, J Holik, M Grunstein, PD Kaufman, ... PLoS Genet 4 (11), e1000270, 2008	157	2008
Ab initio prediction of transcription factor targets using structural knowledge T Kaplan, N Friedman, H Margalit PLoS Comput Biol 1 (1), e1, 2005	140	2005
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition XY Li, MM Harrison, JE Villalta, T Kaplan, MB Eisen Elife 3, e03737, 2014	130	2014
Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease J Moss, J Magenheim, D Neiman, H Zemmour, N Loyfer, A Korach, ... Nature communications 9 (1), 1-12, 2018	120	2018
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo KN Schulz, ER Bondra, A Moshe, JE Villalta, JD Lieb, T Kaplan, ... Genome research 25 (11), 1715-1726, 2015	102	2015
Roles for H2A. Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory JE Halley, T Kaplan, AY Wang, MS Kobor, J Rine PLoS Biol 8 (6), e1000401, 2010	92	2010
Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression M Paris, T Kaplan, XY Li, JE Villalta, SE Lott, MB Eisen PLoS Genet 9 (9), e1003748, 2013	91	2013
High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells Y Zhang, D Handley, T Kaplan, H Yu, AS Bais, T Richards, KV Pandit, ... PloS one 6 (5), e20319, 2011	66	2011
Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains G Ron, Y Globerson, D Moran, T Kaplan Nature Communications 8 (1), 2237, 2017	65	2017
Taf7l cooperates with Trf2 to regulate spermiogenesis H Zhou, I Grubisic, K Zheng, Y He, PJ Wang, T Kaplan, R Tjian Proceedings of the National Academy of Sciences 110 (42), 16886-16891, 2013	60	2013
A novel Bayesian DNA motif comparison method for clustering and retrieval N Habib, T Kaplan, H Margalit, N Friedman PLoS Comput Biol 4 (2), e1000010, 2008	55	2008

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