| Single-nucleosome mapping of histone modifications in S. cerevisiae CL Liu, T Kaplan, M Kim, S Buratowski, SL Schreiber, N Friedman, ... PLoS biology 3 (10), e328, 2005 | 585 | 2005 |
| Dynamics of replication-independent histone turnover in budding yeast MF Dion, T Kaplan, M Kim, S Buratowski, N Friedman, OJ Rando Science 315 (5817), 1405, 2007 | 576 | 2007 |
| Modeling dependencies in protein-DNA binding sites Y Barash, G Elidan, N Friedman, T Kaplan Proceedings of the seventh annual international conference on Research in …, 2003 | 293 | 2003 |
| Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition MM Harrison, XY Li, T Kaplan, MR Botchan, MB Eisen PLoS Genet 7 (10), e1002266, 2011 | 270 | 2011 |
| Large-scale discovery of enhancers from human heart tissue D May, MJ Blow, T Kaplan, DJ McCulley, BC Jensen, JA Akiyama, A Holt, ... Nature genetics 44 (1), 89, 2012 | 246 | 2012 |
| Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing M Yassour, T Kaplan, HB Fraser, JZ Levin, J Pfiffner, X Adiconis, ... Proceedings of the National Academy of Sciences 106 (9), 3264-3269, 2009 | 241 | 2009 |
| Structure and function of a transcriptional network activated by the MAPK Hog1 AP Capaldi, T Kaplan, Y Liu, N Habib, A Regev, N Friedman, EK O'Shea Nature genetics 40 (11), 1300, 2008 | 228 | 2008 |
| A high-resolution enhancer atlas of the developing telencephalon A Visel, L Taher, H Girgis, D May, O Golonzhka, RV Hoch, GL McKinsey, ... Cell 152 (4), 895-908, 2013 | 208 | 2013 |
| Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development T Kaplan, XY Li, PJ Sabo, S Thomas, JA Stamatoyannopoulos, MD Biggin, ... PLoS Genet 7 (2), e1001290, 2011 | 196 | 2011 |
| Cell cycle–and chaperone-mediated regulation of H3K56ac incorporation in yeast T Kaplan, CL Liu, JA Erkmann, J Holik, M Grunstein, PD Kaufman, ... PLoS Genet 4 (11), e1000270, 2008 | 155 | 2008 |
| Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease J Moss, J Magenheim, D Neiman, H Zemmour, N Loyfer, A Korach, ... Nature communications 9 (1), 1-12, 2018 | 144 | 2018 |
| Ab initio prediction of transcription factor targets using structural knowledge T Kaplan, N Friedman, H Margalit PLoS Comput Biol 1 (1), e1, 2005 | 139 | 2005 |
| Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition XY Li, MM Harrison, JE Villalta, T Kaplan, MB Eisen Elife 3, e03737, 2014 | 131 | 2014 |
| Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo KN Schulz, ER Bondra, A Moshe, JE Villalta, JD Lieb, T Kaplan, ... Genome research 25 (11), 1715-1726, 2015 | 105 | 2015 |
| Roles for H2A. Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory JE Halley, T Kaplan, AY Wang, MS Kobor, J Rine PLoS Biol 8 (6), e1000401, 2010 | 93 | 2010 |
| Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression M Paris, T Kaplan, XY Li, JE Villalta, SE Lott, MB Eisen PLoS Genet 9 (9), e1003748, 2013 | 92 | 2013 |
| Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains G Ron, Y Globerson, D Moran, T Kaplan Nature Communications 8 (1), 2237, 2017 | 67 | 2017 |
| High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells Y Zhang, D Handley, T Kaplan, H Yu, AS Bais, T Richards, KV Pandit, ... PloS one 6 (5), e20319, 2011 | 67 | 2011 |
| Taf7l cooperates with Trf2 to regulate spermiogenesis H Zhou, I Grubisic, K Zheng, Y He, PJ Wang, T Kaplan, R Tjian Proceedings of the National Academy of Sciences 110 (42), 16886-16891, 2013 | 62 | 2013 |
| Disease-associated astrocytes in Alzheimer’s disease and aging N Habib, C McCabe, S Medina, M Varshavsky, D Kitsberg, ... Nature neuroscience 23 (6), 701-706, 2020 | 59 | 2020 |
Nir FriedmanProfessor of Computer Science and Life Sciences, Hebrew UniversityVerified email at mail.huji.ac.il
