Yuji Inagaki
Yuji Inagaki
Professor of Center of Computational Sciences, University of Tsukuba
Verified email at ccs.tsukuba.ac.jp
Title
Cited by
Cited by
Year
Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of “primitive” eukaryotes
AGB Simpson, Y Inagaki, AJ Roger
Molecular Biology and Evolution 23 (3), 615-625, 2006
2032006
Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic chromalveolates
F Burki, Y Inagaki, J Bråte, JM Archibald, PJ Keeling, T Cavalier-Smith, ...
Genome Biology and Evolution 1, 231-238, 2009
1602009
Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures
K Takishita, N Yubuki, N Kakizoe, Y Inagaki, T Maruyama
Extremophiles 11 (4), 563-576, 2007
1552007
Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
NJ Patron, Y Inagaki, PJ Keeling
Current Biology 17 (10), 887-891, 2007
1492007
A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1α
PJ Keeling, Y Inagaki
Proceedings of the National Academy of Sciences of USA 101 (43), 15380-15385, 2004
1132004
Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1α phylogenies
Y Inagaki, E Susko, NM Fast, AJ Roger
Molecular Biology and Evolution 21 (7), 1340-1349, 2004
1112004
Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle
T Nakayama, R Kamikawa, G Tanifuji, Y Kashiyama, N Ohkouchi, ...
Proceedings of the National Academy of Sciences 111 (31), 11407-11412, 2014
902014
Evolution of the eukaryotic translation termination system: origins of release factors
Y Inagaki, WF Doolittle
Molecular Biology and Evolution 17 (6), 882-889, 2000
902000
Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity
Y Inagaki, C Blouin, WF Doolittle, AJ Roger
Nucleic Acids Research 30 (2), 532-544, 2002
752002
Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution
M Ehara, Y Inagaki, KI Watanabe, T Ohama
Current Genetics 37 (1), 29-33, 2000
742000
Evolutionary relationship between dinoflagellates bearing obligate diatom endosymbionts: insight into tertiary endosymbiosis.
Y Inagaki, JB Dacks, WF Doolittle, KI Watanabe, T Ohama
International Journal of Systematic and Evolutionary Microbiology 50 (6 …, 2000
722000
Capsaspora owczarzaki is an independent opisthokont lineage
I Ruiz-Trillo, Y Inagaki, LA Davis, S Sperstad, B Landfald, AJ Roger
Current Biology 14 (22), R946-R947, 2004
662004
A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum
MA Minge, K Shalchian-Tabrizi, OK Tørresen, K Takishita, I Probert, ...
BMC Evolutionary Biology 10 (1), 191, 2010
652010
Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group
MW Brown, AA Heiss, R Kamikawa, Y Inagaki, A Yabuki, AK Tice, ...
Genome Biology and Evolution 10 (2), 427-433, 2018
642018
Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study
Y Inagaki, AGB Simpson, JB Dacks, AJ Roger
Systematic Biology 53 (4), 582-593, 2004
612004
Translation of synonymous codons in family boxes by Mycoplasma capricolum tRNAs with unmodified uridine or adenosine at the first anticodon position.
Y Inagaki, A Kojima, Y Bessho, H Hori, T Ohama, S Osawa
Journal of Molecular Biology 251 (4), 486-492, 1995
611995
Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin
T Matsumoto, F Shinozaki, T Chikuni, A Yabuki, K Takishita, M Kawachi, ...
Protist 162 (2), 268-276, 2011
582011
Testing for differences in rates-across-sites distributions in phylogenetic subtrees
E Susko, Y Inagaki, C Field, ME Holder, AJ Roger
Molecular Biology and Evolution 19 (9), 1514-1523, 2002
582002
Class I release factors in ciliates with variant genetic codes
Y Inagaki, WF Doolittle
Nucleic Acids Research 29 (4), 921-927, 2001
562001
Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes.
MM Leger, M Kolisko, R Kamikawa, CW Stairs, K Kume, I Čepička, ...
Nature Ecology & Evolution 1 (4), 0092, 2017
552017
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